Skip to content
View Atemia's full-sized avatar
8 followers · 18 following

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair ExtraordinaireAchievement: Pull Sharkx2Achievement: Arctic Code Vault Contributor

Highlights

  • Pro

Block or report Atemia

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
Atemia/README.md

Joseph Atemia

Postdoctoral Researcher · Max Planck Institute for Biology Tübingen
Plant Genomics · Population Genetics · Bioinformatics

LinkedIn Email

I build pipelines and tools to make sense of large-scale genomic data — from wild maize relatives to fungal pathogens to horned melon. My work sits at the intersection of population genetics, comparative genomics, and computational biology.

Current focus  →  Cucumis metuliferus genomics @ Weigel Lab, MPI Tübingen
PhD            →  Teosinte genomics, Heinrich Heine University Düsseldorf

Languages & Tools

Python R Bash Git SLURM

Selected Publications

  • Pan-genome of 226 Magnaporthe oryzae strains from eastern Africa — bioRxiv 2025
  • From habitat to genotype: climate, phenotypes & taxonomy in teosinte — preprint
  • GXP: Analyze and plot plant omics data in web browsers — Plants 2022

Pinned Loading

  1. usadellab/GeneExpressionPlots usadellab/GeneExpressionPlots Public

    A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).

    TypeScript 7 4

  2. usadellab/prot-scriber usadellab/prot-scriber Public

    Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or D…

    Rust 6 5