Code review#1

Draft

jwindhager wants to merge 85 commits intodevel-reviewfrom

Commits on Oct 4, 2023

Initial commit
Matthew Smith
committed
Initial commit
Matthew Smith
committed

Commits on Oct 5, 2023

feat: std_addition for quant
Matthew Smith
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feat: generate markdown report
Matthew Smith
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update: include markdown report
Matthew Smith
committed

Commits on Oct 6, 2023

update: amount per pixel quant
Matthew Smith
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update formatting of report
Matthew Smith
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update folder structure
Matthew Smith
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update vignette
Matthew Smith
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update function documentation
Matthew Smith
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Commits on Oct 9, 2023

restructure
Matthew Smith
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Initial release
Matthew Smith
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fix documentation)
Matthew Smith
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update DESCRIPTION
Matthew Smith
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Commits on Oct 10, 2023

update README
Matthew Smith
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update README file type
Matthew Smith
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update README file type
Matthew Smith
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Add unit tests with testthat
Matthew Smith
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Merge pull request #1 from targeted-lipidomics/dev
MJS-708
authored

Commits on Jan 8, 2024

add read mrm data
Matthew Smith
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Merge pull request #2 from targeted-lipidomics/dev
MJS-708
authored
Update README.rst
MJS-708
authored
collate mrm tool
Matthew Smith
committed
add tests
Matthew Smith
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add test data
Matthew Smith
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update read mrm data
Matthew Smith
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fix
Matthew Smith
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updates
Matthew Smith
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Commits on Jan 9, 2024

Update README.rst
MJS-708
authored
update test data
Matthew Smith
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update data
Matthew Smith
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update data
Matthew Smith
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update tests and test data
Matthew Smith
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add ion lib data
Matthew Smith
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add transition metadata tool
Matthew Smith
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Commits on Jan 12, 2024

update test data
Matthew Smith
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update tests
Matthew Smith
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Commits on Jan 26, 2024

Add different data matrices types
Matthew Smith
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fix cal functionality
Matthew Smith
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update manuals
Matthew Smith
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Commits on Jan 29, 2024

update example data
Matthew Smith
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update example data
Matthew Smith
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update vignettes
Matthew Smith
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update example data
Matthew Smith
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update cal curve info
Matthew Smith
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update example data
Matthew Smith
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update example data
Matthew Smith
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update vignette
Matthew Smith
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update vignette
Matthew Smith
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Merge branch 'devel' into dev
MJS-708
authored
Merge pull request #3 from targeted-lipidomics/dev
MJS-708
authored
Update README.rst
MJS-708
authored
Update README.rst
MJS-708
authored

Commits on Apr 23, 2024

add linear plot
Matthew Smith
committed

Commits on Apr 24, 2024

add ion image plotting
Matthew Smith
committed
add snr thresholding
Matthew Smith
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refactor
Matthew Smith
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refactor
Matthew Smith
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Commits on Apr 26, 2024

chore
Matthew Smith
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update manuals
Matthew Smith
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chore
Matthew Smith
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chore
Matthew Smith
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Commits on Apr 27, 2024

fix join metadata tables
Matthew Smith
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add histogram scale
Matthew Smith
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chore
Matthew Smith
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Commits on May 2, 2024

fix
Matthew Smith
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Merge pull request #4 from targeted-lipidomics/v0.1.1
MJS-708
authored

Commits on Jun 28, 2024

update compatibility with Cardinal v3.6
Matthew Smith
committed

Commits on Jul 31, 2024

refactor - cardinal 3.6 compatible
Matthew Smith
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updated example data
Matthew Smith
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updated mans
Matthew Smith
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updated vignette
Matthew Smith
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chore
Matthew Smith
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fix ggplot themes for plots
Matthew Smith
committed

Commits on Aug 1, 2024

update vignette
Matthew Smith
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update vignette
Matthew Smith
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update vignette
Matthew Smith
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update vignette
Matthew Smith
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update vignette
Matthew Smith
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Commits on Aug 2, 2024

update tests
Matthew Smith
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update man
Matthew Smith
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update vignette
Matthew Smith
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update vignette
Matthew Smith
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update man
Matthew Smith
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Commits on Aug 23, 2024

Merge pull request #5 from targeted-lipidomics/dev-cardinalv3.6
MJS-708
authored