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plot from NWB files#37

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luiztauffer wants to merge 28 commits intoChangLabUcsf:masterfrom
luiztauffer:master
Open

plot from NWB files#37
luiztauffer wants to merge 28 commits intoChangLabUcsf:masterfrom
luiztauffer:master

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@luiztauffer
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I added a file 'plot_from_nwb.py' that allows the use of the visualization tools from img_pipe but reading directly from NWB files. The changes contain:

  • the 'plot_from_nwb.py' file, located at '/plotting' directory
  • the Jupyter Notebook tutorial 'img_pipe_plot_from_nwb.ipynb', located at '/tutorials' directory
  • Five image files for the tutorial, located at '/gallery' directory
  • changed 1 line at the 'init.py' file from '/plotting', to load the new function
  • added the dependency 'nwbext_ecog' to be installed from pip, at 'environment_py35.yml'

@bendichter bendichter requested a review from libertyh April 24, 2019 14:10
@bendichter
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@luiztauffer let's try to get the CI to pass. Could you add pynwb as a dependency?

@bendichter
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@luiztauffer can you try installing from environment_py36.yml? It's working on my machine but I can't get it to work on the continuous integration

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@luiztauffer
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luiztauffer commented May 19, 2019

Doing the following made the conda install pass:

  • Comment out some locks e.g. - curl=7.64.1 #=ha441bb4_0
  • Comment out 'appnope', which is only available for mac.
  • Added channels conda-forge and statiskit

Pip is still failing though.

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2 participants