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Pull requests: DataBiosphere/azul

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Pull requests list

Update Docker to 29.1.5 (#7608)
#7718 opened Jan 24, 2026 by achave11-ucsc • Draft 100+
1
@achave11-ucsc
2
Backport: f5bc2fe (#7711, PR #7708)
#7717 opened Jan 24, 2026 by dsotirho-ucsc Loading…
16 of 55 tasks
@hannes-ucsc @dsotirho-ucsc
2
Backport: 5d5f1da (#7711, PR #7709)
#7715 opened Jan 24, 2026 by dsotirho-ucsc Loading…
16 of 55 tasks
@hannes-ucsc @dsotirho-ucsc
2
Upgrade software dependencies 2026-01-19 (#7704) backup:gitlab [process] PR requires backing up GitLab instances deploy:gitlab [process] PR requires deploying `gitlab` component deploy:runner [process] PR requires deploying `runner` component deploy:shared [process] PR requires deploying `shared` component reqs [process] PR includes commit requiring ``make requirements``
#7714 opened Jan 23, 2026 by dsotirho-ucsc Loading…
25 of 83 tasks
1
@hannes-ucsc @dsotirho-ucsc
3
Bump wheel from 0.45.1 to 0.46.2 dependencies [subject] External software packages that the system depends on operator [process] To be addressed by whoever is operator python Pull requests that update python code
#7710 opened Jan 22, 2026 by dependabot bot Loading…
@dsotirho-ucsc
Upgrade to urllib3 from 1.x to 2.x (#6777) reqs [process] PR includes commit requiring ``make requirements``
#7707 opened Jan 21, 2026 by hannes-ucsc Loading… 100+
1
@hannes-ucsc
4
Fix: Python license file has the wrong contents (#7372)
#7701 opened Jan 16, 2026 by dsotirho-ucsc Loading… 100+
@hannes-ucsc @dsotirho-ucsc
6
Add support for HCA atlas (#7128) 0 reviews [process] Lead didn't request any changes partial [process] PR is does not completely resolve associated ticket reindex:dev [process] PR requires reindexing dev sandbox [process] Resolution is being verified in sandbox deployment upgrade [process] PR includes commit requiring manual upgrade
#7700 opened Jan 15, 2026 by achave11-ucsc Loading… 100+
1
@achave11-ucsc
9
Fix: Mirror URI in manifest /index/files response is set for MA files (#7687) 2 reviews [process] Lead requested changes twice reqs [process] PR includes commit requiring ``make requirements``
#7693 opened Jan 13, 2026 by nadove-ucsc Loading… 100+
1
@hannes-ucsc @nadove-ucsc
20
Fix: Content type in mirror info objects inconsistent with index (#7193, #7675) 2 reviews [process] Lead requested changes twice reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7656 opened Dec 18, 2025 by nadove-ucsc Loading… 100+
2
@hannes-ucsc @nadove-ucsc
32
Fix: OpenSearch queries are huge (#7580)
#7650 opened Dec 16, 2025 by nadove-ucsc • Draft 100+
@nadove-ucsc
2
Fix: Accumulator overflow during aggregation (#6793) API API change affecting callers reindex:anvildev [process] PR requires reindexing anvildev reindex:anvilprod [process] PR requires reindexing anvilprod reindex:dev [process] PR requires reindexing dev reindex:prod [process] PR requires reindexing prod
#7641 opened Dec 12, 2025 by dsotirho-ucsc • Draft 100+
1
@dsotirho-ucsc
21
Add Azul GitHub project and priority support to schedule.py (#7474, #7548) 3 reviews [process] Lead requested changes thrice
#7622 opened Dec 8, 2025 by achave11-ucsc Loading… 100+
2
@hannes-ucsc @achave11-ucsc
34
Fix: Manifest content hash computation times out (#6123) 3 reviews [process] Lead requested changes thrice API API change affecting callers
#7258 opened Jul 8, 2025 by dsotirho-ucsc Loading… 100+
1
@hannes-ucsc @dsotirho-ucsc
44
Make GitLab instance CIS level 2 compliant (#5990)
#6694 opened Nov 8, 2024 by dsotirho-ucsc • Draft 100+
1
@dsotirho-ucsc
2
Fix: Can't use curl to download a single manifest in one invocation (#5918) 4+ reviews [process] Lead requested changes four times or more API API change affecting callers
#6099 opened Mar 26, 2024 by dsotirho-ucsc Loading… 100+
1
@dsotirho-ucsc
107
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