[pre-commit.ci] pre-commit autoupdate

[pre-commit-ci]

updates:

• github.com/pre-commit/pre-commit-hooks: v5.0.0 → v6.0.0
• https://github.com/psf/black → https://github.com/psf/black-pre-commit-mirror
• github.com/psf/black-pre-commit-mirror: 24.8.0 → 26.3.1
• github.com/PyCQA/flake8: 7.1.1 → 7.3.0
• github.com/pycqa/isort: 5.13.2 → 8.0.1

[Copilot]

Pull request overview

Updates the repo’s pre-commit tooling versions and applies the resulting auto-formatting changes across a handful of Python modules, alongside updating the formatting CI job’s Python version matrix.

Changes:

• Bump pre-commit hook revisions (pre-commit-hooks, black mirror, flake8, isort) and adjust flake8 ignores.
• Apply formatter-driven whitespace/docstring and string formatting changes in several Python files.
• Update the formatting GitHub Actions workflow to run on newer Python versions.

Reviewed changes

Copilot reviewed 13 out of 13 changed files in this pull request and generated no comments.

Show a summary per file

File	Description
utils/utils_interval.py	Minor whitespace formatting after module docstring.
utils/scoring_metrics_test.py	Formatter-driven docstring and textwrap.dedent call formatting changes.
utils/misc.py	Formatter-driven module docstring formatting change.
utils/__init__.py	Formatter-driven module docstring formatting change.
trainer.py	Formatter-driven textwrap.dedent call formatting changes.
test_entry.py	Formatter-driven module docstring formatting change.
sample_data/__init__.py	Formatter-driven module docstring formatting change.
gather_results.py	Formatter-driven module docstring formatting change.
dataset.py	Formatter-driven nildent call formatting change.
data_reader.py	Formatter-driven module docstring formatting change.
cfg.py	Formatter-driven module docstring formatting change.
.pre-commit-config.yaml	Pre-commit hook autoupdate (versions + black mirror switch + flake8 ignore tweak).
.github/workflows/check-formatting.yml	Update formatting CI Python matrix versions.

Comments suppressed due to low confidence (1)

.github/workflows/check-formatting.yml:23

• The workflow matrix now includes Python 3.12, but this job installs the full requirements.txt (and also pins torch==1.10.0+cu113). Several pinned deps in requirements.txt (e.g., numpy 1.22 / scipy 1.6 / pandas 1.2) and torch 1.10 are very unlikely to install on 3.12, so the formatting check will likely fail before pre-commit runs. Consider either (a) limiting the matrix to versions compatible with the pinned deps, or (b) removing the heavyweight dependency installs from this formatting-only job and just running pre-commit (or installing only pre-commit’s own dependencies).

        python-version: ["3.10", "3.12"]

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}

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