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boegel merged 1 commit into from
May 5, 2026
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update overview of available software #755

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3 changes: 2 additions & 1 deletion docs/available_software/detail/biom-format.md
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Expand Up @@ -25,7 +25,7 @@ json_ld:
ratingValue: 5
softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
on your system
softwareVersion: '[''2.1.15'']'
softwareVersion: '[''2.1.17'', ''2.1.15'']'
url: https://biom-format.org
---
# biom-format
Expand All @@ -45,4 +45,5 @@ The BIOM file format (canonically pronounced biome) is designed to be

|biom-format version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
| --- | --- | --- | --- | --- |
|2.1.17|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`biom-format/2.1.17-foss-2025a`|
|2.1.15|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`biom-format/2.1.15-foss-2023a`|
20 changes: 18 additions & 2 deletions docs/available_software/detail/scikit-bio.md
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Expand Up @@ -25,7 +25,7 @@ json_ld:
ratingValue: 5
softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
on your system
softwareVersion: '[''0.6.0'']'
softwareVersion: '[''0.7.1.post1'', ''0.6.0'']'
url: http://scikit-bio.org
---
# scikit-bio
Expand All @@ -41,13 +41,21 @@ and educational resources for bioinformatics.

|scikit-bio version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
| --- | --- | --- | --- | --- |
|0.7.1.post1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`scikit-bio/0.7.1.post1-foss-2025a`|
|0.6.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`scikit-bio/0.6.0-foss-2023a`|

## Extensions

Overview of extensions included in scikit-bio installations


### array_api_compat


|`array_api_compat` version|scikit-bio modules that include it|
| --- | --- |
|1.13.0|`scikit-bio/0.7.1.post1-foss-2025a`|

### hdmedians


Expand All @@ -60,11 +68,19 @@ Overview of extensions included in scikit-bio installations

|`natsort` version|scikit-bio modules that include it|
| --- | --- |
|8.4.0|`scikit-bio/0.6.0-foss-2023a`|
|8.4.0|`scikit-bio/0.7.1.post1-foss-2025a`<br/>`scikit-bio/0.6.0-foss-2023a`|

### packaging


|`packaging` version|scikit-bio modules that include it|
| --- | --- |
|25.0|`scikit-bio/0.7.1.post1-foss-2025a`|

### scikit-bio


|`scikit-bio` version|scikit-bio modules that include it|
| --- | --- |
|0.7.1.post1|`scikit-bio/0.7.1.post1-foss-2025a`|
|0.6.0|`scikit-bio/0.6.0-foss-2023a`|
6 changes: 4 additions & 2 deletions docs/available_software/detail/scikit-learn.md
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Expand Up @@ -31,7 +31,7 @@ json_ld:
ratingValue: 5
softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
on your system
softwareVersion: '[''1.5.2'', ''1.4.0'', ''1.3.1'']'
softwareVersion: '[''1.7.0'', ''1.5.2'', ''1.4.0'', ''1.3.1'']'
url: https://scikit-learn.org/stable/index.html
---
# scikit-learn
Expand All @@ -49,6 +49,7 @@ It strives to be simple and efficient, accessible to everybody, and reusable in

|scikit-learn version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
| --- | --- | --- | --- | --- |
|1.7.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`scikit-learn/1.7.0-gfbf-2025a`|
|1.5.2|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`scikit-learn/1.5.2-gfbf-2024a`|
|1.4.0|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`scikit-learn/1.4.0-gfbf-2023b`|
|1.3.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`scikit-learn/1.3.1-gfbf-2023a`|
Expand All @@ -63,6 +64,7 @@ Overview of extensions included in scikit-learn installations

|`scikit-learn` version|scikit-learn modules that include it|
| --- | --- |
|1.7.0|`scikit-learn/1.7.0-gfbf-2025a`|
|1.5.2|`scikit-learn/1.5.2-gfbf-2024a`|
|1.4.0|`scikit-learn/1.4.0-gfbf-2023b`|
|1.3.1|`scikit-learn/1.3.1-gfbf-2023a`|
Expand All @@ -72,4 +74,4 @@ Overview of extensions included in scikit-learn installations

|`sklearn` version|scikit-learn modules that include it|
| --- | --- |
|0.0|`scikit-learn/1.5.2-gfbf-2024a`<br/>`scikit-learn/1.4.0-gfbf-2023b`<br/>`scikit-learn/1.3.1-gfbf-2023a`|
|0.0|`scikit-learn/1.7.0-gfbf-2025a`<br/>`scikit-learn/1.5.2-gfbf-2024a`<br/>`scikit-learn/1.4.0-gfbf-2023b`<br/>`scikit-learn/1.3.1-gfbf-2023a`|
5 changes: 4 additions & 1 deletion docs/available_software/detail/statsmodels.md
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Expand Up @@ -25,7 +25,7 @@ json_ld:
ratingValue: 5
softwareRequirements: See https://www.eessi.io/docs/ for how to make EESSI available
on your system
softwareVersion: '[''0.14.1'']'
softwareVersion: '[''0.14.5'', ''0.14.1'']'
url: https://www.statsmodels.org/
---
# statsmodels
Expand All @@ -41,6 +41,7 @@ and perform statistical tests.

|statsmodels version|Supported CPU targets|Supported GPU targets|EESSI version|Module|
| --- | --- | --- | --- | --- |
|0.14.5|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202506">2025.06</span>|`statsmodels/0.14.5-gfbf-2025a`|
|0.14.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`statsmodels/0.14.1-gfbf-2023b`|
|0.14.1|`generic`: `aarch64`, `x86_64`<br/><span class="software-cpu-arm">Arm</span>: `a64fx`, `neoverse_n1`, `neoverse_v1`, `nvidia/grace`<br/><span class="software-cpu-amd">AMD</span>: `zen2`, `zen3`, `zen4`<br/><span class="software-cpu-intel">Intel</span>: `haswell`, `skylake_avx512`, `sapphirerapids`, `icelake`, `cascadelake`<br/>|*(none)*|<span class="software-eessi-version-202306">2023.06</span>|`statsmodels/0.14.1-gfbf-2023a`|

Expand All @@ -54,11 +55,13 @@ Overview of extensions included in statsmodels installations

|`patsy` version|statsmodels modules that include it|
| --- | --- |
|1.0.1|`statsmodels/0.14.5-gfbf-2025a`|
|0.5.6|`statsmodels/0.14.1-gfbf-2023b`<br/>`statsmodels/0.14.1-gfbf-2023a`|

### statsmodels


|`statsmodels` version|statsmodels modules that include it|
| --- | --- |
|0.14.5|`statsmodels/0.14.5-gfbf-2025a`|
|0.14.1|`statsmodels/0.14.1-gfbf-2023b`<br/>`statsmodels/0.14.1-gfbf-2023a`|
2 changes: 1 addition & 1 deletion mkdocs.yml
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Expand Up @@ -212,7 +212,7 @@ extra:
- icon: fontawesome/brands/twitter
link: https://twitter.com/eessi_hpc
# this gets auto-updated via update_generated_time.sh script run in update_available_software.yml action
generated_time: "Fri, 01 May 2026 at 13:26:54 UTC"
generated_time: "Tue, 05 May 2026 at 03:24:36 UTC"
slack_invite_url: "https://join.slack.com/t/eessi-hpc/shared_invite/zt-2wg10p26d-m_CnRB89xQq3zk9qxf1k3g"
extra_javascript:
# mermaid diagram
Expand Down
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