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fix issues with spack on mac #342

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8e1686e
fix issues with spack on mac
rrsettgast Mar 3, 2026
d688f83
Removing gcc-runtime due to missing files on TTE/pine (#341)
sushma-4 Mar 4, 2026
d78583f
fix batch error
rrsettgast Mar 4, 2026
e5ade51
Merge branch 'bugfix/spackOnMac' of github.com:GEOS-DEV/thirdPartyLib…
rrsettgast Mar 4, 2026
b358470
fix scheduling commands again
rrsettgast Mar 4, 2026
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6 changes: 3 additions & 3 deletions scripts/setupLC-TPL-uberenv.bash
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Original file line number Diff line number Diff line change
Expand Up @@ -88,23 +88,23 @@ function launch_jobs() {
# Note: The max time allowed on the debug queue is 1h. If we need more, switch to pbatch
case "$machine" in
dane)
ALLOC_CMD="salloc -N 1 --exclusive -p pdebug -t 60 -A vortex"
ALLOC_CMD="srun -N 1 --exclusive -p pdebug -t 60 -A vortex"
"${UBERENV_HELPER}" "$INSTALL_DIR" dane gcc-12 "+docs %%gcc-12 ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" dane gcc-13 "+docs %%gcc-13 ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" dane llvm-14 "+docs %%clang-14 ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" dane llvm-19 "+docs %%clang-19 ${COMMON}" "${ALLOC_CMD}" "$@" &
;;

matrix)
ALLOC_CMD="salloc -N 1 --exclusive -p pdebug -t 60 -A vortex"
ALLOC_CMD="srun -N 1 --exclusive -p pdebug -t 60 -A vortex"
"${UBERENV_HELPER}" "$INSTALL_DIR" matrix gcc-12-cuda-12.6 "+cuda~uncrustify cuda_arch=90 %%gcc-12 ^cuda@12.6.0+allow-unsupported-compilers ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" matrix gcc-13-cuda-12.9 "+cuda~uncrustify cuda_arch=90 %%gcc-13 ^cuda@12.9.1+allow-unsupported-compilers ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" matrix llvm-14-cuda-12.6 "+cuda~uncrustify cuda_arch=90 %%clang-14 ^cuda@12.6.0+allow-unsupported-compilers ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" matrix llvm-19-cuda-12.9 "+cuda~uncrustify cuda_arch=90 %%clang-19 ^cuda@12.9.1+allow-unsupported-compilers ${COMMON}" "${ALLOC_CMD}" "$@" &
;;

tuo|tuolumne)
ALLOC_CMD="salloc -N 1 --exclusive -p pdebug -t 60 -A vortex"
ALLOC_CMD="flux run -N 1 -x -t 60m --bank=vortex"
"${UBERENV_HELPER}" "$INSTALL_DIR" tuolumne cce-20-rocm-6.4.3 "+rocm~pygeosx~trilinos~petsc~docs amdgpu_target=gfx942 %%cce-20 ${COMMON}" "${ALLOC_CMD}" "$@" &
"${UBERENV_HELPER}" "$INSTALL_DIR" tuolumne llvm-amdgpu-6.4.3 "+rocm~pygeosx~trilinos~petsc~docs amdgpu_target=gfx942 %%llvm-amdgpu_6_4_3 ${COMMON}" "${ALLOC_CMD}" "$@" &
;;
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17 changes: 17 additions & 0 deletions scripts/spack_configs/macOS/spack.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,13 @@ spack:
operating_system: sequoia
target: aarch64
modules: []
environment:
set:
PATH: /usr/bin:/bin:/usr/sbin:/sbin:/opt/homebrew/bin:/opt/homebrew/sbin
AR: /usr/bin/ar
RANLIB: /usr/bin/ranlib
CMAKE_AR: /usr/bin/ar
CMAKE_RANLIB: /usr/bin/ranlib
extra_rpaths: []
- compiler:
spec: apple-clang@17.0.0
Expand All @@ -45,6 +52,13 @@ spack:
operating_system: sequoia
target: aarch64
modules: []
environment:
set:
PATH: /usr/bin:/bin:/usr/sbin:/sbin:/opt/homebrew/bin:/opt/homebrew/sbin
AR: /usr/bin/ar
RANLIB: /usr/bin/ranlib
CMAKE_AR: /usr/bin/ar
CMAKE_RANLIB: /usr/bin/ranlib
extra_rpaths: []

packages:
Expand All @@ -57,6 +71,9 @@ spack:
lapack: [openblas]
variants: "~openmp"

geosx:
variants: "+addr2line"

openblas:
buildable: False
externals:
Expand Down
13 changes: 7 additions & 6 deletions scripts/spack_configs/pine/spack.yaml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# This is a Spack Environment file for Pine (Spack 1.0.2)
# Run command from the top-level of the repository:
# ./scripts/uberenv/uberenv.py \
# --spec "~openmp~pygeosx~docs" \
# --spec "~openmp~pygeosx~docs %gcc-11" \
# --spack-env-file=scripts/spack_configs/pine/spack.yaml \
# --project-json=.uberenv_config.json \
# --prefix ${GEOS_TPL_DIR}
Expand Down Expand Up @@ -78,11 +78,12 @@ spack:
extra_rpaths: []
buildable: false

gcc-runtime:
buildable: false
externals:
- spec: gcc-runtime@11.4.1
prefix: /usr/lib/gcc/x86_64-redhat-linux/11
# libgcc_s.so.1 is missing in /usr/lib/gcc/x86_64-redhat-linux/11 so removing it for now
# gcc-runtime:
# buildable: false
# externals:
# - spec: gcc-runtime@11.4.1
# prefix: /usr/lib/gcc/x86_64-redhat-linux/11

gmp:
externals:
Expand Down
5 changes: 4 additions & 1 deletion scripts/spack_packages/packages/geosx/package.py
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Original file line number Diff line number Diff line change
Expand Up @@ -177,6 +177,7 @@ class Geosx(CMakePackage, CudaPackage, ROCmPackage):
with when("+trilinos"):
trilinos_packages = '+aztec+stratimikos~amesos2~anasazi~belos~ifpack2~muelu~sacado+thyra+zoltan'
depends_on("trilinos@16.1.0 cflags='-fPIC' cxxflags='-fPIC -include cstdint' fflags='-fPIC'" + trilinos_packages)
depends_on("trilinos fflags='-fsecond-underscore'", when="platform=darwin")
depends_on("trilinos~openmp", when="~openmp")
depends_on("trilinos+openmp", when="+openmp")

Expand Down Expand Up @@ -213,6 +214,7 @@ class Geosx(CMakePackage, CudaPackage, ROCmPackage):
#
depends_on("mathpresso cxxflags='-fPIC'", when='+mathpresso')
depends_on('grpc', when='+grpc')
depends_on('addr2line', when='+addr2line')

# SPHINX_END_DEPENDS

Expand Down Expand Up @@ -647,7 +649,7 @@ def geos_hostconfig(self, spec, prefix, py_site_pkgs_dir=None):
cfg.write('# addr2line\n')
cfg.write('#{0}\n\n'.format('-' * 80))
cfg.write(cmake_cache_option('ENABLE_ADDR2LINE', True))
cfg.write(cmake_cache_entry('ADDR2LINE_EXEC ', '/usr/bin/addr2line'))
cfg.write(cmake_cache_entry('ADDR2LINE_EXEC', os.path.join(spec['addr2line'].prefix.bin, 'addr2line')))

cfg.write('#{0}\n'.format('-' * 80))
cfg.write('# Other\n')
Expand Down Expand Up @@ -842,6 +844,7 @@ def lvarray_hostconfig(self, spec, prefix, py_site_pkgs_dir=None):
cfg.write('# addr2line\n')
cfg.write('#{0}\n\n'.format('-' * 80))
cfg.write(cmake_cache_option('ENABLE_ADDR2LINE', True))
cfg.write(cmake_cache_entry('ADDR2LINE_EXEC', os.path.join(spec['addr2line'].prefix.bin, 'addr2line')))

def cmake_args(self):
pass
Expand Down