MATLAB code to compute activity modes and tSNE embedding of response profiles, Yang et al 2022
Analysis code related to Yang W, Tipparaju SL, Chen G, Li N, (2022). Thalamus-driven functional populations in frontal cortex activity supports decision-making.
The 3 demo analysis scripts perform the following:
- t-SNE embedding of neuronal response profiles (based on PSTH shape)
- compute activity modes from neuronal population responses.
- analysis of selectivity vectors
See detailed comments within.
The code uses dataset from Yang et al 2022, which can be downloaded from Zenodo.org
http://dx.doi.org/10.5281/zenodo.6846161
see description of dataset structure and variables in the documentation included on Zenoodo
Nuo Li Baylor College of Medicine One Baylor Plaza, Houston, TX 77030 nuol@bcm.edu