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PyProphet / pyprophet Public

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Refactor SQL queries and add auto-subsampling feature#208

Merged

singjc merged 5 commits intoPyProphet:masterPyProphet/pyprophet:masterfrom

singjc:mastersingjc/pyprophet:masterCopy head branch name to clipboard

May 6, 2026

Conversation Commits5 (5)Checks Files changed

Merged

Refactor SQL queries and add auto-subsampling feature#208
singjc merged 5 commits intoPyProphet:masterfrom
singjc:master

Commits

Commits on May 6, 2026

Refactor SQL queries in OSWReader to improve alignment feature extraction and ensure correct PEP threshold comparison

singjc
and
Copilot
committed
Add auto-subsampling feature based on number of runs and implement get_num_runs utility function

singjc
and
Copilot
committed
Merge branch 'PyProphet:master' into master
singjc
authored
Fix subsample_ratio reference in score function and optimize get_num_runs for parquet files using DuckDB

singjc
and
Copilot
committed
Merge branch 'master' of github.com:singjc/pyprophet
singjc
committed

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