Human instructions#73

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Gonza10V wants to merge 134 commits into

RudgeLab:mainfrom

MyersResearchGroup:human_instructions

Commits on Apr 25, 2024

libre scripts
Gonza10V
committed

Commits on Jan 7, 2025

Commits on May 15, 2025

new sbol2assembly function and script
Gonza10V
committed

Commits on May 19, 2025

Update assembly.py
LukeDysart17
authored

Commits on May 20, 2025

LukeChangetoPUDU
LukeDysart17
committed

Commits on Jun 5, 2025

Commits on Jun 11, 2025

Commits on Jun 12, 2025

Added the dictionary list creator to utils
LukeDysart17
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Commits on Jun 16, 2025

Fixed bug in dictionaryListCreator
LukeDysart17
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Commits on Jun 20, 2025

new dev repo
Gonza10V
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Commits on Jun 23, 2025

added test files
LukeDysart17
committed

Commits on Jun 25, 2025

Commits on Jul 2, 2025

Assemblies fully tested and functional for taking json
LukeDysart17
committed

Commits on Jul 3, 2025

Luke Dysart final push
LukeDysart17
committed

Commits on Aug 13, 2025

Update utils.py
Gonza10V
authored

Commits on Aug 20, 2025

Update utils.py
Gonza10V
authored

Commits on Aug 27, 2025

Update utils.py
Gonza10V
authored

Commits on Sep 2, 2025

Changed source code to reflect hyperparameter tuning and OOP design. Added plating.py as well to plate colonies after transformation.
Aaron1776
committed

Commits on Sep 3, 2025

Commits on Sep 9, 2025

Commits on Sep 16, 2025

Commits on Sep 19, 2025

changed version to 1.0.0b4;
Aaron1776
committed

Commits on Sep 22, 2025

Commits on Sep 23, 2025

Commits on Sep 30, 2025

Commits on Oct 3, 2025

removing SBOL2 dependency
Gonza10V
committed

Commits on Oct 14, 2025

plating added to init
Gonza10V
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Commits on Nov 11, 2025

Commits on Dec 15, 2025

Commits on Dec 16, 2025

Refactored `assembly.py` to support advanced parameter merging via JSON and kwargs, and added `run_sbol2assembly_with_params.py` script for SBOL loop assembly with custom parameters.
Aaron1776
committed

Commits on Dec 18, 2025

Commits on Dec 19, 2025

Commits on Jan 27, 2026

Merge pull request #6 from MyersResearchGroup/json_Oscar
Aaron1776
authored

Commits on Mar 5, 2026

Commits on Apr 7, 2026

Commits on Apr 8, 2026

Commits on Apr 30, 2026

Improve manual assembly markdown output format
Gonza10V
committed

Commits on May 1, 2026

Commits on May 5, 2026

Commits on May 7, 2026