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When restarting, the positions, velocities, etc. must be overwritten in the lammps context because that is what is run. Overwriting the snapshot in the Sampler is still needed for the correct bias at the first step.
…nel simulation method
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When restarting, the positions, velocities, etc. must be overwritten in the lammps context because that is where the integration occurs. Overwriting the snapshot in Sampler is still required for applying the correct bias at the first step.