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Pull requests: SatoryKono/BioactivityDataAcquisition

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61 Open 2,537 Closed
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Pull requests list

🧹 cleanup: remove commented-out Pandera validation logic layer:domain Domain layer provider:pubmed PubMed pipeline
#2612 opened Apr 2, 2026 by SatoryKono Loading…
2
🔒 [security fix: replace ast.literal_eval with json.loads] ci/cd GitHub Actions, workflows layer:application Application layer layer:domain Domain layer
#2611 opened Apr 2, 2026 by SatoryKono Loading…
6
🧪 [testing improvement: add tests for dq_report_results_core value objects]
#2610 opened Apr 2, 2026 by SatoryKono Loading…
2
🔒 [security fix] Fix XXE vulnerability in PubMed transformer and processor ci/cd GitHub Actions, workflows config Pipeline/filter/schema YAML configs documentation Improvements or additions to documentation layer:application Application layer layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer layer:interfaces Interfaces / CLI layer provider:pubmed PubMed pipeline
#2609 opened Apr 2, 2026 by SatoryKono Loading…
5
🧹 [code health improvement] Fix unused imports in bioetl/__init__.py
#2608 opened Apr 2, 2026 by SatoryKono Loading…
4
⚡ Bolt: optimize regex compilation in apply_entity_naming_rename_plan.py
#2607 opened Apr 2, 2026 by SatoryKono Loading…
2
🧪 [testing improvement: observability interface tests]
#2606 opened Apr 2, 2026 by SatoryKono Loading…
4
🧹 Remove legacy publication aliases ci/cd GitHub Actions, workflows config Pipeline/filter/schema YAML configs documentation Improvements or additions to documentation layer:application Application layer layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer layer:interfaces Interfaces / CLI layer
#2605 opened Apr 2, 2026 by SatoryKono Loading…
14
🧹 remove unused sys import in generate_docs_export.py ci/cd GitHub Actions, workflows config Pipeline/filter/schema YAML configs documentation Improvements or additions to documentation layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer layer:interfaces Interfaces / CLI layer
#2604 opened Apr 2, 2026 by SatoryKono Loading…
9
🧪 [testing improvement: Add L1 test swarm orchestration reports for SWARM-001]
#2603 opened Apr 2, 2026 by SatoryKono Loading…
11
⚡ Bolt: PyArrow Serialization Optimization layer:application Application layer layer:domain Domain layer
#2601 opened Apr 1, 2026 by SatoryKono Loading…
2
🧪 [testing improvement: Fix architecture test drift in agent documentation] ci/cd GitHub Actions, workflows config Pipeline/filter/schema YAML configs layer:application Application layer layer:domain Domain layer
#2596 opened Apr 1, 2026 by SatoryKono Loading…
20
🧹 [code review] Code Review Orchestration execution
#2592 opened Apr 1, 2026 by SatoryKono Loading…
26
⚡ Bolt: Pre-compile regex in entity rename plan ci/cd GitHub Actions, workflows config Pipeline/filter/schema YAML configs layer:application Application layer layer:domain Domain layer layer:infrastructure Infrastructure layer
#2591 opened Mar 31, 2026 by SatoryKono Loading…
6
🧪 [testing improvement: Generate swarm test metrics] config Pipeline/filter/schema YAML configs documentation Improvements or additions to documentation layer:application Application layer layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer
#2590 opened Mar 31, 2026 by SatoryKono Loading…
15
[documentation improvement: Add py-review-orchestrator reports] layer:domain Domain layer
#2589 opened Mar 31, 2026 by SatoryKono Loading…
10
⚡ Bolt: [performance improvement] Optimize PyArrow .as_py() calls layer:domain Domain layer
#2588 opened Mar 30, 2026 by SatoryKono Loading…
3
feat: generate py-test-swarm L1 test reports for SWARM-001
#2587 opened Mar 30, 2026 by SatoryKono Loading…
18
docs: generate hierarchical code review orchestrator reports config Pipeline/filter/schema YAML configs documentation Improvements or additions to documentation layer:application Application layer layer:domain Domain layer
#2586 opened Mar 30, 2026 by SatoryKono Loading…
12
⚡ Bolt: [performance improvement] Optimize PyArrow serialization layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer
#2585 opened Mar 29, 2026 by SatoryKono Loading…
5
docs: generate hierarchical code review reports using static analysis config Pipeline/filter/schema YAML configs layer:application Application layer layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer layer:interfaces Interfaces / CLI layer
#2584 opened Mar 29, 2026 by SatoryKono Loading…
5
⚡ Bolt: [performance improvement] Optimize PyArrow .as_py() calls layer:domain Domain layer
#2583 opened Mar 28, 2026 by SatoryKono Loading…
8
🧹 Add hierarchical code review reports config Pipeline/filter/schema YAML configs layer:domain Domain layer
#2582 opened Mar 28, 2026 by SatoryKono Loading…
2
⚡ Bolt: [performance improvement] Optimize PyArrow column serialization layer:domain Domain layer
#2581 opened Mar 27, 2026 by SatoryKono Loading…
2
docs: run code review orchestration reports ci/cd GitHub Actions, workflows config Pipeline/filter/schema YAML configs layer:application Application layer layer:composition Composition layer layer:domain Domain layer layer:infrastructure Infrastructure layer
#2580 opened Mar 27, 2026 by SatoryKono Loading…
13
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