Add edge-predicate regression check framework#43
Open
maximusunc wants to merge 1 commit into
Open
Conversation
Introduces test_harness/regression_checks/, a pluggable framework for TRAPI-response regression checks that run alongside the existing acceptance/pathfinder pass-fail analysis without overriding genuine failures. The first check (EdgePredicateMatchCheck) verifies that returned knowledge-graph predicates are TRAPI-compatible with the query graph (the queried predicate or a biolink descendant of it), catching cases where the right output curie is reached via the wrong-shape edge. Mismatches surface as a new AgentStatus.REGRESSION so reports can distinguish "wrong answer" from "wrong-shaped answer". biolink-toolkit init failure degrades to SKIPPED rather than crashing the run. https://claude.ai/code/session_012pDrWMNSK3p4cjJ2yp1FjF
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Introduces test_harness/regression_checks/, a pluggable framework for TRAPI-response regression checks that run alongside the existing acceptance/pathfinder pass-fail analysis without overriding genuine failures. The first check (EdgePredicateMatchCheck) verifies that returned knowledge-graph predicates are TRAPI-compatible with the query graph (the queried predicate or a biolink descendant of it), catching cases where the right output curie is reached via the wrong-shape edge.
Mismatches surface as a new AgentStatus.REGRESSION so reports can distinguish "wrong answer" from "wrong-shaped answer". biolink-toolkit init failure degrades to SKIPPED rather than crashing the run.