Skip to content

Conversation

@d33bs
Copy link
Member

@d33bs d33bs commented Jan 6, 2026

Description

This PR enables ome-arrow to automatically gather scale data from ome-tiff and ome-zarr files. This avoids unnecessary manual configuration with the option for overrides where needed.

Related to work on cytomining/CytoDataFrame#175

What kind of change(s) are included?

  • Documentation (changes docs or other related content)
  • Bug fix (fixes an issue).
  • Enhancement (adds functionality).
  • Breaking change (these changes would cause existing functionality to not work as expected).

Checklist

Please ensure that all boxes are checked before indicating that this pull request is ready for review.

  • I have read and followed the CONTRIBUTING.md guidelines.
  • I have searched for existing content to ensure this is not a duplicate.
  • I have performed a self-review of these additions (including spelling, grammar, and related).
  • These changes pass all pre-commit checks.
  • I have added comments to my code to help provide understanding
  • I have added a test which covers the code changes found within this PR
  • I have deleted all non-relevant text in this pull request template.

@review-notebook-app
Copy link

Check out this pull request on  ReviewNB

See visual diffs & provide feedback on Jupyter Notebooks.


Powered by ReviewNB

@d33bs d33bs changed the title Automatically scale ome-tiff and ome-zarr Automatically scale ome-tiff and ome-zarr data Jan 6, 2026
@d33bs d33bs marked this pull request as ready for review January 6, 2026 21:01
@d33bs d33bs requested a review from jenna-tomkinson January 6, 2026 21:01
Copy link
Member

@jenna-tomkinson jenna-tomkinson left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

LGTM! I wish GitHub would treat the images differently so it isn't as hard to go through the PR lol

d33bs and others added 5 commits January 7, 2026 16:13
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
@d33bs
Copy link
Member Author

d33bs commented Jan 7, 2026

Thanks @jenna-tomkinson ! After addressing comments, merging this in.

@d33bs d33bs merged commit de76fe4 into WayScience:main Jan 7, 2026
9 checks passed
@d33bs d33bs deleted the zarr-and-tiff-scaling branch January 7, 2026 23:35
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants