-
Notifications
You must be signed in to change notification settings - Fork 1
Automatically scale ome-tiff and ome-zarr data #14
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Merged
Conversation
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
|
Check out this pull request on See visual diffs & provide feedback on Jupyter Notebooks. Powered by ReviewNB |
jenna-tomkinson
approved these changes
Jan 7, 2026
Member
jenna-tomkinson
left a comment
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
LGTM! I wish GitHub would treat the images differently so it isn't as hard to go through the PR lol
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Co-Authored-By: Jenna Tomkinson <107513215+jenna-tomkinson@users.noreply.github.com>
Member
Author
|
Thanks @jenna-tomkinson ! After addressing comments, merging this in. |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Description
This PR enables ome-arrow to automatically gather scale data from ome-tiff and ome-zarr files. This avoids unnecessary manual configuration with the option for overrides where needed.
Related to work on cytomining/CytoDataFrame#175
What kind of change(s) are included?
Checklist
Please ensure that all boxes are checked before indicating that this pull request is ready for review.