fix: setup hygiene — parse-miss preservation, atomic writes, timestamped backups (supersedes #348)#376
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…ped backups (supersedes #348) 1. mcp_server.py: Empty existing_cmd from parse miss now preserves config instead of clobbering it (Claude Code + Desktop). 2. cli.py: settings.json written via tmp + rename for atomicity. 3. cli.py: CLAUDE.md.bak includes timestamp to prevent overwrite. Based on Huntehhh's PR #348. Supersedes #348. Co-Authored-By: Huntehhh <hunter@users.noreply.github.com>
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Summary
mcp_server.py: Parse-miss onclaude mcp listpreserves existing config instead of clobberingcli.py: Atomic settings.json write via tmp + renamecli.py: Timestamped CLAUDE.md.bak prevents overwrite on re-install2 files, +17/-5. Clean rewrite of Hunter's #348 (stripped #346 duplication and 300-line test file). Supersedes #348.
Co-Authored-By: Huntehhh hunter@users.noreply.github.com