Implement OOP for annotators, add custom tool support, and optimize test#8
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Konstantaza wants to merge 2 commits intoctlab:mainfrom
Open
Implement OOP for annotators, add custom tool support, and optimize test#8Konstantaza wants to merge 2 commits intoctlab:mainfrom
Konstantaza wants to merge 2 commits intoctlab:mainfrom
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BaseAnnotatorand a factory pattern insrc/samovar/annotators_wrapper.py.CustomAnnotatorandsrc/annotators/custom.sh.workflow/annotators/Snakefileby leveraging Python objects (params.annotator.get_snakemake_shell_cmd()) instead of multipleif/elsestatements.parse_annotators.py, unified the parsing logic, and fixed a minortrue_annotationinitialization bug.pytestfor parsers. Added anete3.NCBITaxamock to prevent hour-long database downloads during local testing