Update and creation of current profiles

devel-permissive/Dockerfile

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+#
+# Rock R Server Dockerfile for 'rock devel permissive' profile
+#
+# https://github.com/datashield/docker-rock
+#
+
+# Use 'datashield/rock_devel:1.1.0'
+FROM datashield/rock_devel:1.1.0
+
+ENV DSBASE_VERSION=v6.3.5-permissive
+
+ENV ROCK_LIB=/var/lib/rock/R/library
+
+# Create Labels
+
+LABEL dsBase=$DSBASE_VERSION
+
+# Update of packages - dsBase
+RUN Rscript -e "remotes::install_github('datashield/dsBase', ref = '$DSBASE_VERSION', dependencies = TRUE, upgrade = FALSE, lib = '$ROCK_LIB')" && \
+    chown -R rock $ROCK_LIB

devel-permissive/Makefile

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+#
+# Docker helper
+#
+
+docker_compose_file=docker-compose.yml
+no_cache=true
+name=datashield/rock_devel-permissive
+tag=1.1.0
+
+# Build Docker image
+build-image:
+	docker build --no-cache=$(no_cache) -t="${name}:$(tag)" .
+
+push-image:
+	docker image push ${name}:$(tag)
+
+up:
+	docker compose -f $(docker_compose_file) up -d --remove-orphans
+
+down:
+	docker compose -f $(docker_compose_file) down
+
+stop:
+	docker compose -f $(docker_compose_file) stop
+
+start:
+	docker compose -f $(docker_compose_file) start
+
+restart:
+	docker compose -f $(docker_compose_file) restart
+
+pull:
+	docker compose -f $(docker_compose_file) pull --include-deps
+
+logs:
+	docker compose -f $(docker_compose_file) logs -f
+
+build:
+	docker compose -f $(docker_compose_file) build --no-cache
+
+clean:
+	rm -rf target

devel-permissive/README.md

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+# rock_devel-permissive
+
+[Rock R server](https://www.obiba.org/pages/products/rock/) with DataSHIELD packages as described by [rock_devel-permissive:](https://datashield.org/help/standard-profiles-and-plaforms).

devel-permissive/docker-compose.yml

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+services:
+  devel-permissive:
+    image: datashield/rock_devel-permissive:1.1.0
+    #build: .
+    ports:
+      - ${PORT}:8085
+    environment:
+      - ROCK_ADMINISTRATOR_NAME=${ROCK_ADMINISTRATOR_NAME}
+      - ROCK_ADMINISTRATOR_PASSWORD=${ROCK_ADMINISTRATOR_PASSWORD}
+      - ROCK_MANAGER_NAME=${ROCK_MANAGER_NAME}
+      - ROCK_MANAGER_PASSWORD=${ROCK_MANAGER_PASSWORD}
+      - ROCK_USER_NAME=${ROCK_USER_NAME}
+      - ROCK_USER_PASSWORD=${ROCK_USER_PASSWORD}
+      - ROCK_ID=${ROCK_ID}
+      - ROCK_CLUSTER=${ROCK_CLUSTER}
+      - ROCK_TAGS=${ROCK_TAGS}
+      # for self-registration
+      #- ROCK_SERVER=${ROCK_SERVER}
+      #- ROCK_OPAL_SERVER=${ROCK_OPAL_SERVER}
+      #- ROCK_OPAL_TOKEN=${ROCK_OPAL_TOKEN}
+    volumes:
+      - ${PROJECT_HOME}/rock_home:/srv

devel/Dockerfile

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+#
+# Rock R Server Dockerfile with DataSHIELD Devel profile
+#
+# https://github.com/datashield/docker-rock
+#
+
+# R 4.5.2, Rock 2.2.0
+FROM datashield/rock-base:6.3.5-R4.5.2
+
+ENV ROCK_LIB=/var/lib/rock/R/library
+
+# Update of packages
+RUN apt-get update -y && \
+    apt-get upgrade -y && \
+    apt-get autoremove -y && \
+    apt-get clean && \
+    R -q -e "update.packages(ask=FALSE)" && \
+    chown -R rock $ROCK_LIB && \
+    rm -rf /var/lib/apt/lists/*