[anaconda]-fixing security vulnerabilities - Werkzeug, distributed, wheel, filelock and bokeh#1790
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Pull request overview
Updates the Anaconda devcontainer image to remediate reported Python package vulnerabilities by bumping affected package versions and aligning smoke tests with the new minimums.
Changes:
- Bump
wheel,Werkzeug, and adddistributedto the security patching flow. - Update Anaconda smoke tests to require the patched minimum versions.
- Patch-bump the Anaconda image manifest version.
Reviewed changes
Copilot reviewed 3 out of 3 changed files in this pull request and generated 3 comments.
| File | Description |
|---|---|
| src/anaconda/.devcontainer/apply_security_patches.sh | Updates the list of vulnerable/pinned Python packages to install patched versions. |
| src/anaconda/test-project/test.sh | Raises minimum required versions for wheel/werkzeug and adds a version check for distributed. |
| src/anaconda/manifest.json | Patch version bump for the Anaconda image. |
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| # vulnerabilities: | ||
| # werkzeug - [GHSA-f9vj-2wh5-fj8j] | ||
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| vulnerable_packages=( "mistune=3.0.1" "aiohttp=3.10.11" "cryptography=44.0.1" "h11=0.16.0" "jinja2=3.1.6" "jupyter_core=5.8.1" "protobuf=5.29.5" "requests=2.32.4" "setuptools=78.1.1" "transformers=4.53.0" "urllib3=2.5.0" "Werkzeug=3.0.6" "jupyter-lsp=2.2.2" "scrapy=2.11.2" \ | ||
| "zipp=3.19.1" "tornado=6.4.2" "jupyterlab=4.4.8" "imagecodecs=2024.9.22" "fonttools=4.60.2" "pyarrow=17.0.0" "brotli=1.2.0" ) | ||
| vulnerable_packages=( "mistune=3.0.1" "aiohttp=3.10.11" "cryptography=44.0.1" "h11=0.16.0" "jinja2=3.1.6" "jupyter_core=5.8.1" "protobuf=5.29.5" "requests=2.32.4" "setuptools=78.1.1" "transformers=4.53.0" "urllib3=2.5.0" "Werkzeug=3.1.5" "jupyter-lsp=2.2.2" "scrapy=2.11.2" \ | ||
| "zipp=3.19.1" "tornado=6.4.2" "jupyterlab=4.4.8" "imagecodecs=2024.9.22" "fonttools=4.60.2" "pyarrow=17.0.0" "brotli=1.2.0" "distributed=2026.1.0" "wheel=0.46.2" ) |
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The header comment lists only a Werkzeug vulnerability (and references a different GHSA ID), but this script now also patches wheel and distributed. Please update the comment block to reflect the current GHSA IDs/packages being addressed so future maintainers know why these pins exist.
See below for a potential fix:
# Security-related version pins for known vulnerabilities in dependencies.
# This script currently enforces versions for packages including Werkzeug,
# distributed, wheel, and others listed in vulnerable_packages below.
# Specific GHSA IDs / advisories are tracked in the project security docs;
# keep this comment in sync if new vulnerable packages are added.
vulnerable_packages=( "mistune=3.0.1" "aiohttp=3.10.11" "cryptography=44.0.1" "h11=0.16.0" "jinja2=3.1.6" "jupyter_core=5.8.1" "protobuf=5.29.5" "requests=2.32.4" "setuptools=78.1.1" "transformers=4.53.0" "urllib3=2.5.0" "Werkzeug=3.1.5" "jupyter-lsp=2.2.2" "scrapy=2.11.2" \
"zipp=3.19.1" "tornado=6.4.2" "jupyterlab=4.4.8" "imagecodecs=2024.9.22" "fonttools=4.60.2" "pyarrow=17.0.0" "brotli=1.2.0" "distributed=2026.1.0" "wheel=0.46.2" )
| # Add an array for packages that should always pin to the provided version, | ||
| # even if higher version is available in conda channel | ||
| pin_to_required_version=("transformers" "imagecodecs" "brotli" "protobuf") | ||
| pin_to_required_version=("transformers" "imagecodecs" "brotli" "protobuf" "distributed") |
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Adding distributed to pin_to_required_version means the script will force-install exactly distributed==2026.1.0 even if the base image/conda channel already provides a newer (potentially more secure) version. Unless there is a specific compatibility reason to pin distributed, it would be safer to let it float to any version >= the required minimum and keep it out of the pin list.
Suggested change
| pin_to_required_version=("transformers" "imagecodecs" "brotli" "protobuf" "distributed") | |
| pin_to_required_version=("transformers" "imagecodecs" "brotli" "protobuf") |
Contributor
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@sireeshajonnalagadda could we avoid pinning this? Also, more generally, why do we need these pinned versions (if you have the context)?
Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
sireeshajonnalagadda
changed the title
sireeshajonnalagadda
changed the title
This reverts commit a1ac116.
abdurriq
approved these changes
Feb 24, 2026
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Fixing security vulnerabilities for anacoda image. ref