Release: merge develop into master

.copier-answers.yml

@@ -1,6 +1,6 @@
 # WARNING: Do not edit this file manually.
 # Any changes will be overwritten by Copier.
-_commit: v0.10.1-41-g508666e
+_commit: v0.11.0-7-gb5113cf
 _src_path: gh:easyscience/templates
 lib_docs_url: https://easyscience.github.io/templates
 lib_doi: 10.5281/zenodo.18163581

.github/actions/download-artifact/action.yml

@@ -1,5 +1,5 @@
 name: 'Download artifact'
-description: 'Generic wrapper for actions/download-artifact'
+description: 'Wrapper for actions/download-artifact'
 inputs:
   name:
     description: 'Name of the artifact to download'
@@ -39,7 +39,7 @@ runs:
   using: 'composite'
   steps:
     - name: Download artifact
-      uses: actions/download-artifact@v4
+      uses: actions/download-artifact@v8
       with:
         name: ${{ inputs.name }}
         path: ${{ inputs.path }}

.github/actions/github-script/action.yml

@@ -13,7 +13,7 @@ inputs:
 runs:
   using: 'composite'
   steps:
-    - uses: actions/github-script@v8
+    - uses: actions/github-script@v9
       with:
         script: ${{ inputs.script }}
         github-token: ${{ inputs.github-token }}

.github/actions/setup-easyscience-bot/action.yml

@@ -22,9 +22,9 @@ runs:
   steps:
     - name: Create GitHub App installation token
       id: app-token
-      uses: actions/create-github-app-token@v2
+      uses: actions/create-github-app-token@v3
       with:
-        app-id: ${{ inputs.app-id }}
+        client-id: ${{ inputs.app-id }}
         private-key: ${{ inputs.private-key }}
         repositories: ${{ inputs.repositories }}
 

.github/actions/setup-pixi/action.yml

@@ -1,5 +1,5 @@
 name: 'Setup Pixi Environment'
-description: 'Sets up pixi with common configuration'
+description: 'Wrapper for prefix-dev/setup-pixi'
 inputs:
   environments:
     description: 'Pixi environments to setup'

.github/actions/upload-artifact/action.yml

@@ -1,5 +1,5 @@
 name: 'Upload artifact'
-description: 'Generic wrapper for actions/upload-artifact'
+description: 'Wrapper for actions/upload-artifact'
 inputs:
   name:
     description: 'Artifact name'
@@ -38,7 +38,7 @@ runs:
   using: 'composite'
   steps:
     - name: Upload artifact
-      uses: actions/upload-artifact@v4
+      uses: actions/upload-artifact@v7
       with:
         name: ${{ inputs.name }}
         path: ${{ inputs.path }}

.github/actions/upload-codecov/action.yml

@@ -1,5 +1,5 @@
 name: 'Upload coverage to Codecov'
-description: 'Generic wrapper for codecov/codecov-action@v5'
+description: 'Wrapper for codecov/codecov-action'
 
 inputs:
   name:
@@ -32,7 +32,7 @@ inputs:
 runs:
   using: composite
   steps:
-    - uses: codecov/codecov-action@v5
+    - uses: codecov/codecov-action@v6
       with:
         name: ${{ inputs.name }}
         flags: ${{ inputs.flags }}

.github/workflows/backmerge.yml

@@ -20,19 +20,14 @@ concurrency:
   group: backmerge-master-into-develop
   cancel-in-progress: false
 
-# Opt into Node.js 24 for all JavaScript actions.
-# Remove once all referenced actions natively target Node 24.
-env:
-  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
-
 jobs:
   backmerge:
     runs-on: ubuntu-latest
     timeout-minutes: 10
 
     steps:
       - name: Checkout repository (for local actions)
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Setup easyscience[bot]
         id: bot
@@ -43,7 +38,7 @@ jobs:
           repositories: ${{ github.event.repository.name }}
 
       - name: Checkout repository (with bot token)
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0
           token: ${{ steps.bot.outputs.token }}

.github/workflows/cleanup.yml

@@ -15,11 +15,11 @@ on:
       days:
         description: 'Number of days.'
         required: true
-        default: 30
+        default: '30'
       minimum_runs:
         description: 'The minimum runs to keep for each workflow.'
         required: true
-        default: 6
+        default: '6'
       delete_workflow_pattern:
         description:
           'The name or filename of the workflow. if not set then it will target all
@@ -61,11 +61,6 @@ on:
           - 'false'
           - 'true'
 
-# Opt into Node.js 24 for all JavaScript actions.
-# Remove once all referenced actions natively target Node 24.
-env:
-  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
-
 jobs:
   del-runs:
     runs-on: ubuntu-latest

.github/workflows/issues-labels.yml

@@ -1,6 +1,6 @@
-# Verifies if an issue has at least one of the `[scope]` and one of the
-# `[priority]` labels. If not, the bot adds labels with a warning emoji
-# to indicate that those labels need to be added.
+# Verifies if the current issue has at least one real `[scope]` label and one
+# real `[priority]` label. If either is missing, the workflow adds a reminder
+# label with a warning emoji.
 
 name: Issue labels check
 
@@ -11,15 +11,8 @@ on:
 permissions:
   issues: write
 
-# Opt into Node.js 24 for all JavaScript actions.
-# Remove once all referenced actions natively target Node 24.
-env:
-  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
-
 jobs:
   check-labels:
-    if: github.actor != 'easyscience[bot]'
-
     runs-on: ubuntu-latest
 
     concurrency:
@@ -28,29 +21,129 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
-      - name: Setup easyscience[bot]
-        id: bot
-        uses: ./.github/actions/setup-easyscience-bot
+      - name: Sync missing-label reminders
+        uses: ./.github/actions/github-script
         with:
-          app-id: ${{ vars.EASYSCIENCE_APP_ID }}
-          private-key: ${{ secrets.EASYSCIENCE_APP_KEY }}
+          script: |
+            const fs = require('fs');
 
-      - name: Check for required [scope] label
-        uses: trstringer/require-label-prefix@v1
-        with:
-          secret: ${{ steps.bot.outputs.token }}
-          prefix: '[scope]'
-          labelSeparator: ' '
-          addLabel: true
-          defaultLabel: '[scope] ⚠️ label needed'
-
-      - name: Check for required [priority] label
-        uses: trstringer/require-label-prefix@v1
-        with:
-          secret: ${{ steps.bot.outputs.token }}
-          prefix: '[priority]'
-          labelSeparator: ' '
-          addLabel: true
-          defaultLabel: '[priority] ⚠️ label needed'
+            const issueNumber = context.issue.number;
+            const action = context.payload.action;
+            const changedLabel = context.payload.label?.name ?? null;
+            const labels = context.payload.issue.labels.map(({ name }) => name);
+            const requirements = [
+              {
+                prefix: '[scope] ',
+                reminder: '[scope] ⚠️ label needed',
+              },
+              {
+                prefix: '[priority] ',
+                reminder: '[priority] ⚠️ label needed',
+              },
+            ];
+
+            const labelsToAdd = [];
+            const labelsToRemove = [];
+            const evaluations = [];
+
+            console.log(`::group::Issue label check for #${issueNumber}`);
+            console.log(`Event action: ${action}`);
+            if (changedLabel) {
+              console.log(`Event label: ${changedLabel}`);
+            }
+            console.log(
+              `Current labels: ${labels.length > 0 ? labels.join(', ') : '(none)'}`,
+            );
+
+            for (const { prefix, reminder } of requirements) {
+              const matchingRealLabels = labels.filter(
+                (name) => name.startsWith(prefix) && name !== reminder,
+              );
+              const hasRealLabel = matchingRealLabels.length > 0;
+              const hasReminderLabel = labels.includes(reminder);
+
+              evaluations.push({
+                prefix,
+                reminder,
+                matchingRealLabels,
+                hasReminderLabel,
+              });
+
+              if (hasRealLabel && hasReminderLabel) {
+                labelsToRemove.push(reminder);
+              } else if (!hasRealLabel && !hasReminderLabel) {
+                labelsToAdd.push(reminder);
+              }
+            }
+
+            for (const evaluation of evaluations) {
+              if (evaluation.matchingRealLabels.length > 0) {
+                console.log(
+                  `Found required ${evaluation.prefix}label(s): ${evaluation.matchingRealLabels.join(', ')}`,
+                );
+              } else {
+                console.log(`Missing required ${evaluation.prefix}label.`);
+              }
+
+              if (evaluation.hasReminderLabel) {
+                console.log(`Reminder label already present: ${evaluation.reminder}`);
+              }
+            }
+
+            if (labelsToAdd.length > 0) {
+              console.log(`Adding reminder labels: ${labelsToAdd.join(', ')}`);
+              await github.rest.issues.addLabels({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                issue_number: context.issue.number,
+                labels: labelsToAdd,
+              });
+            }
+
+            for (const name of labelsToRemove) {
+              console.log(`Removing reminder label: ${name}`);
+              await github.rest.issues.removeLabel({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                issue_number: context.issue.number,
+                name,
+              });
+            }
+
+            if (labelsToAdd.length === 0 && labelsToRemove.length === 0) {
+              console.log('No label changes required.');
+            }
+
+            console.log('::endgroup::');
+
+            if (process.env.GITHUB_STEP_SUMMARY) {
+              const summaryLines = [
+                '### Issue Label Check',
+                `- Issue: #${issueNumber}`,
+                `- Event: ${action}`,
+                `- Trigger label: ${changedLabel ?? '(none)'}`,
+                `- Current labels: ${labels.length > 0 ? labels.join(', ') : '(none)'}`,
+                '',
+                '#### Requirement status',
+                ...evaluations.map((evaluation) => {
+                  const status =
+                    evaluation.matchingRealLabels.length > 0
+                      ? `found ${evaluation.matchingRealLabels.join(', ')}`
+                      : 'missing';
+                  const reminder = evaluation.hasReminderLabel
+                    ? `reminder present: ${evaluation.reminder}`
+                    : `reminder absent: ${evaluation.reminder}`;
+                  return `- ${evaluation.prefix}: ${status}; ${reminder}`;
+                }),
+                '',
+                `- Labels to add: ${labelsToAdd.length > 0 ? labelsToAdd.join(', ') : '(none)'}`,
+                `- Labels to remove: ${labelsToRemove.length > 0 ? labelsToRemove.join(', ') : '(none)'}`,
+              ];
+
+              fs.appendFileSync(
+                process.env.GITHUB_STEP_SUMMARY,
+                `${summaryLines.join('\n')}\n`,
+              );
+            }

.github/workflows/lint-format.yml

@@ -34,17 +34,14 @@ permissions:
 # Set the environment variables to be used in all jobs defined in this workflow
 env:
   CI_BRANCH: ${{ github.head_ref || github.ref_name }}
-  # Opt into Node.js 24 for all JavaScript actions.
-  # Remove once all referenced actions natively target Node 24.
-  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
 
 jobs:
   lint-format:
     runs-on: ubuntu-latest
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
 
       - name: Set up pixi
         uses: ./.github/actions/setup-pixi

.github/workflows/release-notes.yml

@@ -10,11 +10,6 @@ on:
   # Allows you to run this workflow manually from the Actions tab
   workflow_dispatch:
 
-# Opt into Node.js 24 for all JavaScript actions.
-# Remove once all referenced actions natively target Node 24.
-env:
-  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
-
 jobs:
   draft-release-notes:
     permissions:
@@ -25,7 +20,7 @@ jobs:
 
     steps:
       - name: Checkout repository
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           fetch-depth: 0 # full history with tags to get the version number
 
@@ -66,7 +61,7 @@ jobs:
           GITHUB_TOKEN: ${{ steps.bot.outputs.token }}
 
       - name: Create GitHub draft release
-        uses: softprops/action-gh-release@v2
+        uses: softprops/action-gh-release@v3
         with:
           draft: true
           tag_name: ${{ steps.draft.outputs.tag_name }}

.github/workflows/release-pr.yml

@@ -24,16 +24,13 @@ permissions:
 env:
   DEFAULT_BRANCH: ${{ github.event.repository.default_branch }}
   SOURCE_BRANCH: ${{ inputs.source_branch || 'develop' }}
-  # Opt into Node.js 24 for all JavaScript actions.
-  # Remove once all referenced actions natively target Node 24.
-  FORCE_JAVASCRIPT_ACTIONS_TO_NODE24: true
 
 jobs:
   create-pull-request:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout ${{ env.SOURCE_BRANCH }} branch
-        uses: actions/checkout@v5
+        uses: actions/checkout@v6
         with:
           ref: ${{ env.SOURCE_BRANCH }}