IMP Tutorial

This GitHub repository corresponds to the IMP workshop in Model building, Refinement and Validation of data derived from Cryo-EM at NCBS Bangalore.

Google colab notebook

Slides for the workshop

Click here for the slides

ChimeraX

• Install UCSF ChimeraX¹ from here: https://www.cgl.ucsf.edu/chimerax/download.html

• Install the rmf viewer plugin for ChimeraX.

  Steps:

  1. Open ChimeraX and go to Tools>More tools.
  2. Search for RMF
  3. Click on Install

Related tutorials and GitHub repos

• GitHub repository:
• Tutorial:
• Integrative Modeling Platform²:
• Python Modeling Interface:
• PMI analysis pipeline:

Footnotes

1. Meng EC, Goddard TD, Pettersen EF, Couch GS, Pearson ZJ, Morris JH, et al. UCSF ChimeraX: Tools for structure building and analysis. Protein Sci. 2023;32(11):e4792. https://doi.org/10.1002/pro.4792. ↩

2. Saltzberg D, Greenberg CH, Viswanath S, Chemmama I, Webb B, Pellarin R, Echeverria I, Sali A. Modeling Biological Complexes Using Integrative Modeling Platform. Methods Mol Biol. 2019;2022:353-377. https://doi.org/10.1007/978-1-4939-9608-7_15. ↩