updated numpy version; added dependabot.yml#4
Merged
jdeschamps merged 4 commits intomainfrom Nov 19, 2025
Merged
Conversation
jdeschamps
reviewed
Nov 17, 2025
Comment on lines
+9
to
+10
| ignore: | ||
| - dependency-name: "torchmetrics" No newline at end of file |
Member
There was a problem hiding this comment.
Suggested change
| ignore: | |
| - dependency-name: "torchmetrics" |
| ] | ||
| dependencies = [ | ||
| "numpy<2", | ||
| "numpy>=1.21", |
Member
There was a problem hiding this comment.
Suggested change
| "numpy>=1.21", | |
| "numpy>=1.21,<3.0.0", |
| dependencies = [ | ||
| "numpy<2", | ||
| "numpy>=1.21", | ||
| "scipy", |
Member
There was a problem hiding this comment.
Can we add an upper constraint to these?
Member
There was a problem hiding this comment.
I mean all the other dependencies
Member
Author
There was a problem hiding this comment.
@jdeschamps
You mean sth like this?
dependencies = [
"numpy>=1.21,<3.0.0",
"scipy<=1.16.3",
"scikit-image<=0.25.2",
"torch<=2.9.1",
"torchmetrics<=1.8.2",
"tqdm<=4.67.1",
]
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
2 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
There was a conflict about the
numpyversion when I tried to havecareamicsandmicrossimin auvproject.I updated
pyproject:requires-python = ">=3.9"->requires-python = ">=3.11""numpy<2"->"numpy>=1.21"To be compatible with
careamics. The notebook runs fine after the update.I also added the
dependabot.ymlto take care of dependency updates.