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[ialarmedalien]

Description of PR purpose/changes

• Please include a summary of the change and which issue is fixed.
• Please also include relevant motivation and context.
• List any dependencies that are required for this change.

Testing Instructions

• Details for how to test the PR:

• Tests pass locally and in GitHub Actions

Dev Checklist:

• My code follows the guidelines at https://sites.google.com/lbl.gov/trussresources/home?authuser=0
• I have performed a self-review of my own code
• I have commented my code, particularly in hard-to-understand areas
• I have made corresponding changes to the documentation
• My changes generate no new warnings
• I have added tests that prove my fix is effective or that my feature works
• New and existing unit tests pass locally with my changes
• I have run Ruff format to format my code
• I have run Ruff check and fixed any errors that it uncovered
• Any dependent changes have been merged and published in downstream modules

Updating Version and Release Notes (if applicable)

• Version has been bumped for each release.
• README has been updated for each release.

[codecov]

Codecov Report

❌ Patch coverage is 89.13043% with 20 lines in your changes missing coverage. Please review.
✅ Project coverage is 56.47%. Comparing base (9d041cf) to head (8546b1b).
⚠️ Report is 13 commits behind head on main.

Files with missing lines	Patch %	Lines
src/cdm_data_loaders/utils/s3.py	88.96%	16 Missing ⚠️
src/cdm_data_loaders/pipelines/ncbi_rest_api.py	86.36%	3 Missing ⚠️
src/cdm_data_loaders/parsers/uniprot/idmapping.py	50.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #129      +/-   ##
==========================================
+ Coverage   53.09%   56.47%   +3.38%     
==========================================
  Files          63       63              
  Lines        3008     3079      +71     
==========================================
+ Hits         1597     1739     +142     
+ Misses       1411     1340      -71     

Files with missing lines	Coverage Δ
src/cdm_data_loaders/pipelines/core.py	98.27% <100.00%> (+0.49%)	⬆️
src/cdm_data_loaders/pipelines/cts_defaults.py	100.00% <100.00%> (ø)
src/cdm_data_loaders/parsers/uniprot/idmapping.py	79.54% <50.00%> (ø)
src/cdm_data_loaders/pipelines/ncbi_rest_api.py	82.57% <86.36%> (+0.43%)	⬆️
src/cdm_data_loaders/utils/s3.py	88.96% <88.96%> (ø)

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