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Bump the all-dependencies group with 5 updates#105

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Bump the all-dependencies group with 5 updates#105
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Updates the requirements on mlflow[auth], pandas, ipython, pytest and pytest-cov to permit the latest version.
Updates mlflow[auth] from 3.7.0 to 3.9.0

Release notes

Sourced from mlflow[auth]'s releases.

v.3.9.0

We're excited to announce MLflow 3.9.0, which includes several notable updates:

Major New Features:

  • 🔮 MLflow Assistant: Figuring out the next steps to debug your apps and agents can be challenging. We're excited to introduce the MLflow Assistant, an in-product chatbot that can help you identify, diagnose, and fix issues. The assistant is backed by Claude Code, and directly passes context from the MLflow UI to Claude. Click on the floating "Assistant" button in the bottom right of the MLflow UI to get started!
  • 📈 Trace Overview Dashboard: You can now get insights into your agent's performance at a glance with the new "Overview" tab in GenAI experiments. Many pre-built statistics are available out of the box, including performance metrics (e.g. latency, request count), quality metrics (based on assessments), and tool call summaries. If there are any additional charts you'd like to see, please feel free to raise an issue in the MLflow repository!
  • ✨ AI Gateway: We're revamping our AI Gateway feature! AI Gateway provides a unified interface for your API requests, allowing you to route queries to your LLM provider(s) of choice. In MLflow 3.9.0, the Gateway server is now located directly in the tracking server, so you don't need to spin up a new process. Additional features such as passthrough endpoints, traffic splits, and fallback models are also available, with more to come soon! For more detailed information, please take a look at the docs.
  • 🔎 Online Monitoring with LLM Judges: Configure LLM judges to automatically run on your traces, without having to write a line of code! You can either use one of our pre-defined judges, or provide your own prompt and instructions to create custom metrics. Head to the new "Judges" tab within the GenAI Experiment UI to get started.
  • 🤖 Judge Builder UI: Define and iterate on custom LLM judge prompts directly from the UI! Within the new "Judges" tab, you can create your own prompt for an LLM judge, and test-run it on your traces to see what the output would be. Once you're happy with it, you can either use it for online monitoring (as mentioned above), or use it via the Python SDK for your evals.
  • 🔗 Distributed Tracing: Trace context can now be propagated across different services and processes, allowing you to truly track request lifecycles from end to end. The related APIs are defined in the mlflow.tracing.distributed module (with more documentation to come soon).
  • 📚 MemAlign - a new judge optimizer algorithm: We're excited to introduce MemAlignOptimizer, a new algorithm that makes your judges smarter over time. It learns general guidelines from past feedback while dynamically retrieving relevant examples at runtime, giving you more accurate evaluations.

Features:

... (truncated)

Changelog

Sourced from mlflow[auth]'s changelog.

3.9.0 (2026-01-28)

We're excited to announce MLflow 3.9.0, which includes several notable updates:

Major New Features:

  • 🔮 MLflow Assistant: Figuring out the next steps to debug your apps and agents can be challenging. We're excited to introduce the MLflow Assistant, an in-product chatbot that can help you identify, diagnose, and fix issues. The assistant is backed by Claude Code, and directly passes context from the MLflow UI to Claude. Click on the floating "Assistant" button in the bottom right of the MLflow UI to get started!
  • 📈 Trace Overview Dashboard: You can now get insights into your agent's performance at a glance with the new "Overview" tab in GenAI experiments. Many pre-built statistics are available out of the box, including performance metrics (e.g. latency, request count), quality metrics (based on assessments), and tool call summaries. If there are any additional charts you'd like to see, please feel free to raise an issue in the MLflow repository!
  • ✨ AI Gateway: We're revamping our AI Gateway feature! AI Gateway provides a unified interface for your API requests, allowing you to route queries to your LLM provider(s) of choice. In MLflow 3.9.0, the Gateway server is now located directly in the tracking server, so you don't need to spin up a new process. Additional features such as passthrough endpoints, traffic splits, and fallback models are also available, with more to come soon! For more detailed information, please take a look at the docs.
  • 🔎 Online Monitoring with LLM Judges: Configure LLM judges to automatically run on your traces, without having to write a line of code! You can either use one of our pre-defined judges, or provide your own prompt and instructions to create custom metrics. Head to the new "Judges" tab within the GenAI Experiment UI to get started.
  • 🤖 Judge Builder UI: Define and iterate on custom LLM judge prompts directly from the UI! Within the new "Judges" tab, you can create your own prompt for an LLM judge, and test-run it on your traces to see what the output would be. Once you're happy with it, you can either use it for online monitoring (as mentioned above), or use it via the Python SDK for your evals.
  • 🔗 Distributed Tracing: Trace context can now be propagated across different services and processes, allowing you to truly track request lifecycles from end to end. The related APIs are defined in the mlflow.tracing.distributed module (with more documentation to come soon).
  • 📚 MemAlign - a new judge optimizer algorithm: We're excited to introduce MemAlignOptimizer, a new algorithm that makes your judges smarter over time. It learns general guidelines from past feedback while dynamically retrieving relevant examples at runtime, giving you more accurate evaluations.

Features:

... (truncated)

Commits
  • cf3d582 AgentServer: fix streaming middleware bug (#20428)
  • 697f7cf Fix the trace compare tab display bug (#20434)
  • 5612ffc Fix assistant button background in dark theme (#20433)
  • edd1971 Fix issue where memalign doesn't read inputs from trace (#20421)
  • 574abec Fix AttributeError when expectations column contains None or NaN values (#20420)
  • 942cd3f Style GenAI docs Overview sidebar item to match section headers (#20412)
  • 532d8e5 Run python3 dev/update_mlflow_versions.py pre-release ... (#20413)
  • 039fd1c Update skills submodule (#20406)
  • 25ad6d0 Fix Anthropic and Gemini streaming for LiteLLM providers (#20398)
  • ca6fbe7 Support interruptiong assistant session (#20122)
  • Additional commits viewable in compare view

Updates pandas to 3.0.1

Release notes

Sourced from pandas's releases.

pandas 3.0.1

We are pleased to announce the release of pandas 3.0.1. This is a patch release in the 3.0.x series and includes some regression fixes and bug fixes. We recommend that all users of the 3.0.x series upgrade to this version.

See the full whatsnew for a list of all the changes.

Pandas 3.0.0 supports Python 3.11 and higher. The release can be installed from PyPI:

python -m pip install --upgrade pandas==3.0.*

Or from conda-forge

conda install -c conda-forge pandas=3.0

Please report any issues with the release on the pandas issue tracker.

Thanks to all the contributors who made this release possible.

Commits
  • e04b26f RLS: 3.0.1 (#64206)
  • 47909e6 [backport 3.0.x] ENH: Add item() method to ExtensionArray class (#64134) (#64...
  • a061bfd Backport PR #64199 on branch 3.0.x (DOC: cleanup 3.0.1 whatsnew) (#64201)
  • 085a385 [backport 3.0.x] BUG: Fix read_hdf failing on generic datetime64 dtype (#6400...
  • 5f17047 [backport 3.0.x] BUG: use fill_null fallback for bug in pyarrow 21 on Windows...
  • 0d3a8cb Backport PR #64122 on branch 3.0.x (REG: Allow RE2 syntax in str.contains and...
  • 78e1917 Backport PR #64185 on branch 3.0.x (TST: remove fixed xfail for PyArrow 23.0....
  • 75a42ca Backport PR #64168 on branch 3.0.x (TST: add legacy file generation and tests...
  • 46d443f Backport PR #64092 on branch 3.0.x (BUG: DataFrame.loc fills b'' instead of N...
  • 9d67932 Backport PR #64068 on branch 3.0.x (BUG: fixed to_timedelta with list of int ...
  • Additional commits viewable in compare view

Updates ipython to 9.10.0

Commits

Updates pytest to 9.0.2

Release notes

Sourced from pytest's releases.

9.0.2

pytest 9.0.2 (2025-12-06)

Bug fixes

  • #13896: The terminal progress feature added in pytest 9.0.0 has been disabled by default, except on Windows, due to compatibility issues with some terminal emulators.

    You may enable it again by passing -p terminalprogress. We may enable it by default again once compatibility improves in the future.

    Additionally, when the environment variable TERM is dumb, the escape codes are no longer emitted, even if the plugin is enabled.

  • #13904: Fixed the TOML type of the tmp_path_retention_count settings in the API reference from number to string.

  • #13946: The private config.inicfg attribute was changed in a breaking manner in pytest 9.0.0. Due to its usage in the ecosystem, it is now restored to working order using a compatibility shim. It will be deprecated in pytest 9.1 and removed in pytest 10.

  • #13965: Fixed quadratic-time behavior when handling unittest subtests in Python 3.10.

Improved documentation

  • #4492: The API Reference now contains cross-reference-able documentation of pytest's command-line flags <command-line-flags>.
Commits
  • 3d10b51 Prepare release version 9.0.2
  • 188750b Merge pull request #14030 from pytest-dev/patchback/backports/9.0.x/1e4b01d1f...
  • b7d7bef Merge pull request #14014 from bluetech/compat-note
  • bd08e85 Merge pull request #14013 from pytest-dev/patchback/backports/9.0.x/922b60377...
  • bc78386 Add CLI options reference documentation (#13930)
  • 5a4e398 Fix docs typo (#14005) (#14008)
  • d7ae6df Merge pull request #14006 from pytest-dev/maintenance/update-plugin-list-tmpl...
  • 556f6a2 pre-commit: fix rst-lint after new release (#13999) (#14001)
  • c60fbe6 Fix quadratic-time behavior when handling unittest subtests in Python 3.10 ...
  • 73d9b01 Merge pull request #13995 from nicoddemus/patchback/backports/9.0.x/1b5200c0f...
  • Additional commits viewable in compare view

Updates pytest-cov to 7.0.0

Changelog

Sourced from pytest-cov's changelog.

7.0.0 (2025-09-09)

  • Dropped support for subprocesses measurement.

    It was a feature added long time ago when coverage lacked a nice way to measure subprocesses created in tests. It relied on a .pth file, there was no way to opt-out and it created bad interations with coverage's new patch system <https://coverage.readthedocs.io/en/latest/config.html#run-patch>_ added in 7.10 <https://coverage.readthedocs.io/en/7.10.6/changes.html#version-7-10-0-2025-07-24>_.

    To migrate to this release you might need to enable the suprocess patch, example for .coveragerc:

    .. code-block:: ini

    [run] patch = subprocess

    This release also requires at least coverage 7.10.6.

  • Switched packaging to have metadata completely in pyproject.toml and use hatchling <https://pypi.org/project/hatchling/>_ for building. Contributed by Ofek Lev in [#551](https://github.com/pytest-dev/pytest-cov/issues/551) <https://github.com/pytest-dev/pytest-cov/pull/551>_ with some extras in [#716](https://github.com/pytest-dev/pytest-cov/issues/716) <https://github.com/pytest-dev/pytest-cov/pull/716>_.

  • Removed some not really necessary testing deps like six.

6.3.0 (2025-09-06)

  • Added support for markdown reports. Contributed by Marcos Boger in [#712](https://github.com/pytest-dev/pytest-cov/issues/712) <https://github.com/pytest-dev/pytest-cov/pull/712>_ and [#714](https://github.com/pytest-dev/pytest-cov/issues/714) <https://github.com/pytest-dev/pytest-cov/pull/714>_.
  • Fixed some formatting issues in docs. Anonymous contribution in [#706](https://github.com/pytest-dev/pytest-cov/issues/706) <https://github.com/pytest-dev/pytest-cov/pull/706>_.

6.2.1 (2025-06-12)

  • Added a version requirement for pytest's pluggy dependency (1.2.0, released 2023-06-21) that has the required new-style hookwrapper API.

  • Removed deprecated license classifier (packaging).

  • Disabled coverage warnings in two more situations where they have no value:

    • "module-not-measured" in workers
    • "already-imported" in subprocesses

6.2.0 (2025-06-11)

  • The plugin now adds 3 rules in the filter warnings configuration to prevent common coverage warnings being raised as obscure errors::

    default:unclosed database in <sqlite3.Connection object at:ResourceWarning once::PytestCovWarning

... (truncated)

Commits
  • 224d896 Bump version: 6.3.0 → 7.0.0
  • 73424e3 Cleanup the docs a bit.
  • 36f1cc2 Bump pins in template.
  • f299c59 Bump the github-actions group with 2 updates
  • 25f0b2e Update docs/config.rst
  • bb23eac Improve configuration docs
  • a19531e Switch from build/pre-commit to uv/prek - this should make this faster.
  • 82f9993 Update changelog.
  • 211b5cd Fix links.
  • 97aadd7 Update some ci config, reformat and apply some lint fixes.
  • Additional commits viewable in compare view

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@dependabot
Bump the all-dependencies group with 5 updates
cd22e57 
Updates the requirements on [mlflow[auth]](https://github.com/mlflow/mlflow), [pandas](https://github.com/pandas-dev/pandas), [ipython](https://github.com/ipython/ipython), [pytest](https://github.com/pytest-dev/pytest) and [pytest-cov](https://github.com/pytest-dev/pytest-cov) to permit the latest version.

Updates `mlflow[auth]` from 3.7.0 to 3.9.0
- [Release notes](https://github.com/mlflow/mlflow/releases)
- [Changelog](https://github.com/mlflow/mlflow/blob/master/CHANGELOG.md)
- [Commits](mlflow/mlflow@v3.7.0...v3.9.0)

Updates `pandas` to 3.0.1
- [Release notes](https://github.com/pandas-dev/pandas/releases)
- [Commits](pandas-dev/pandas@v2.2.2...v3.0.1)

Updates `ipython` to 9.10.0
- [Release notes](https://github.com/ipython/ipython/releases)
- [Commits](ipython/ipython@rel-0.8.4...9.10.0)

Updates `pytest` to 9.0.2
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](pytest-dev/pytest@8.0.0...9.0.2)

Updates `pytest-cov` to 7.0.0
- [Changelog](https://github.com/pytest-dev/pytest-cov/blob/master/CHANGELOG.rst)
- [Commits](pytest-dev/pytest-cov@v6.0.0...v7.0.0)

---
updated-dependencies:
- dependency-name: mlflow[auth]
  dependency-version: 3.9.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
  dependency-group: all-dependencies
- dependency-name: pandas
  dependency-version: 3.0.1
  dependency-type: direct:production
  dependency-group: all-dependencies
- dependency-name: ipython
  dependency-version: 9.10.0
  dependency-type: direct:development
  dependency-group: all-dependencies
- dependency-name: pytest
  dependency-version: 9.0.2
  dependency-type: direct:development
  dependency-group: all-dependencies
- dependency-name: pytest-cov
  dependency-version: 7.0.0
  dependency-type: direct:development
  dependency-group: all-dependencies
...

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Feb 19, 2026
@dependabot dependabot bot requested a review from a team as a code owner February 19, 2026 15:01
@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update python code labels Feb 19, 2026
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