feat: add example ebolavirus mutation pattern configs#456
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ivan-aksamentov wants to merge 1 commit into
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feat: add example ebolavirus mutation pattern configs#456ivan-aksamentov wants to merge 1 commit into
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Placeholder mutationPatterns configuration for BDBV, EBOV, and SUDV to demonstrate the feature; parameters are not scientifically validated. - BDBV: ADAR (A>G, T>C) and APOBEC (G>A in YGH context), window 50, cutoff 3, with synthetic example sequences - EBOV: ADAR (A>G, T>C) and APOBEC-like CpG deamination (C>T in HCG context), window 100, cutoff 5 - SUDV: ADAR (A>G, T>C), window 80, cutoff 4
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Placeholder
mutationPatternsconfiguration for all three Orthoebolavirus species to demonstrate the featureWork items
mutationPatternsconfig to BDBV (ADAR + APOBEC), EBOV (ADAR + APOBEC CpG), and SUDV (ADAR-only)pathogen.jsonfiles with species-specific clustering parameters