ak_MNIecosystem by knoll-alex · Pull Request #9 · samirdas/samirdas.github.io

knoll-alex · 2019-10-23T13:42:44Z

No description provided.

Fixed spacing in LORIS pres

new file to work off for Samir's Open Science presentation

christinerogers

Hi alex, good stuff -- A few notes:

Ideally, your Open Science New presentation wouldn't be on this branch (this risks a conflict when merging)
i've added a slide or two in my comments inline - let me know if the material to put on them isn't clear...
And one more update: there's a new BigBrain site. I"ll check with samir as to whether he wants the update -- if he does, the new url will be: https://bigbrainproject.org/

christinerogers · 2019-10-28T20:48:36Z

MNI_ecosystem.html

+	      <tr>
+	      	<td width="40%" style="vertical-align:middle">
+
+		  <h4 align="center"><font color="f27c30">DATA ENTRY<br>DATA MANAGEMENT<br>DATA VISUALISATION<br>DATA QUERYING<br></font></h4>


I'm looking on my 13" laptop browser (screenshot below)

the words wrap awkwardly. can you increase the width to give more breathing room ?

christinerogers · 2019-10-28T20:49:22Z

MNI_ecosystem.html

+	      	<td width="40%" style="vertical-align:middle">
+
+		  <h4 align="center"><font color="f27c30">DATA ENTRY<br>DATA MANAGEMENT<br>DATA VISUALISATION<br>DATA QUERYING<br></font></h4>
+		  <span class="fragment"><h3 align="center"><a href="https://demo.loris.ca" target="_blank">TRY ME!</a></h3></span>


change to: Try the LORIS Demo

christinerogers · 2019-10-28T20:50:59Z

MNI_ecosystem.html

+	    <h2>What does LORIS do?</h2>
 	    <br><table class = "reveal" style="padding:0; margin:0" width="50%">
 	      <tr>
 	      	<td width="30%" style="vertical-align:middle">


in the lines below, change :

heterogeneous to multi-modal

Storage, processing & dissemination to Storage, curation & dissemination

christinerogers · 2019-10-28T20:52:52Z

MNI_ecosystem.html

 	</section>

-	<!-- WHAT IS LORIS? -->
+	<!-- WHAT IS LORIS? Column 2 -->


As discussed last week, could you add alternate/new slides based on the 2 Google slides, to match the flow of information in the opening CBRAIN slides?

I've gone through my notes and I must have missed a note about the google slides - can you remind me?

Sure, here's the link: only you and I can access.
Information for the first few loris slides (similar information is already presented in the first few cbrain slides)
https://docs.google.com/presentation/d/1Gg9442Fl2R59buR19e0IuGOKTRW3G2xKTkNXZMnizHo/edit?usp=sharing

Ok, I added a slide but I must be missing something/forgetting what we had discussed. Let's revisit tomorrow.

christinerogers · 2019-10-28T20:53:51Z

MNI_ecosystem.html

-	    <a href="http://niak.simexp-lab.org/" target="_blank"><p style="margin:135px 0px 0px 0px;">http://niak.simexp-lab.org/</p></a>
+	  <section>
+          <h3>Boutiques and Containerization</h3>
+          <img src="images/boutiques_paradigm.png">


this Boutiques image is missing (broken)

the image you have in #9 (comment) is fine 👍
and please cite the paper

thanks, fixed

christinerogers · 2019-10-28T21:15:24Z

MNI_ecosystem.html

 	</section>   

-	<!--PIVT-->
+	<!--PIVT Column 6-->


the PIVT image below is broken.

this slide should say :
PIVT : Platform-independent Visualization Tool
custom Javascript libraries for
moving Neuroimaging to the web.
Easily integrated into LORIS, CBRAIN, and other platforms.

(new slide)
Visualizing Series data for Electrophysiology and EEG
Javascript libraries in modular React components

[new screenshot - see below]
(2-line caption:) The MNI Open iEEG Atlas in LORIS
https://mni-open-ieegatlas.research.mcgill.ca/

this is in answer to your PIVT question #9 (comment)

done, thanks for this info

christinerogers

typo in the title slide... database should be just "data"

christinerogers · 2019-10-30T19:12:42Z

MNI_ecosystem.html

-	  </section>

-	  <!-- SECOND OPTION FIRST PAGE -->
+	  <!-- FIRST PAGE -->


below:
Database management and processing -> Data management and processing

christinerogers · 2019-10-30T19:16:11Z

https://htmlpreview.github.io/?https://github.com/knoll-alex/samirdas.github.io/blob/ak_MNIecosystem/MNI_ecosystem.html#/3/11

the image isn't showing up but i've pasted it here - let me know if this is a good image to use

Yes, that's the right image. please cite the boutiques paper when you do and use this link:
https://doi.org/10.1093/gigascience/giy016

(my inline comment was here:
#9 (comment) )

christinerogers · 2019-10-30T19:17:05Z

@christinerogers what is PIVT? Need some context - couldn’t find online

I answered inline what to do with this slide, here:
#9 (comment)

christinerogers · 2019-10-30T19:36:52Z

Just noticed - the Open_Science_New presentation is in this PR. Can you remove that file from this PR, so that you won't get conflicts?

christinerogers

Several image files at risk of being deleted, needs a cleanup.
Do not merge.

knoll-alex added 7 commits October 2, 2019 09:05

Merge pull request #1 from knoll-alex/ak_LORIS_indepth

6571be4

Fixed spacing in LORIS pres

Create Open_Science_New

aca7db9

new file to work off for Samir's Open Science presentation

Update MNI_ecosystem.html

9ac7663

new images upload

b652a3e

new image

60d9cb5

Update CIVET slide (3/8)

5541a15

Add files via upload

0c51f63

christinerogers reviewed Oct 28, 2019

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christinerogers suggested changes Oct 30, 2019

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Update MNI_ecosystem.html

29dfcc1

knoll-alex added 2 commits October 30, 2019 16:54

attempt to fix boutiques image

f879b8d

added link to boutiques image

6eab180

christinerogers mentioned this pull request Oct 30, 2019

AK_LORIS_indepth #10

Open

knoll-alex added 9 commits October 30, 2019 18:43

Delete Open_Science_New

a4ab2ce

Update MNI_ecosystem.html

0496d0f

Add files via upload

6e80ccb

Update MNI_ecosystem.html

72f87b0

Delete LORIS_features_map.png

e71fa3e

Delete Interoperability.jpg

894cee6

resized images

78c0fae

Update MNI_ecosystem.html

11ef4f8

Update MNI_ecosystem.html

8dd60d1

christinerogers suggested changes Nov 28, 2019

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knoll-alex commented Oct 23, 2019

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christinerogers commented Oct 30, 2019

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