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Pull requests: samtools/hts-specs

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Pull requests list

Clarify GQ vcf
#852 opened Feb 24, 2026 by d-cameron Contributor Loading…
1
1
Clarified INFO END deprecation status vcf
#844 opened Sep 9, 2025 by d-cameron Contributor Loading…
5
Minor CRAM notation suggestion: Use IEC-style MiB notation for powers of two, rather than MB cram
#841 opened Aug 12, 2025 by jmarshall Member Loading…
5
Add succinct description of refget sequence collection in metadata vcf
#832 opened Jun 18, 2025 by tcezard Contributor • Draft
2
Remove refget from hts-specs refget
#830 opened Jun 2, 2025 by andrewyatz Contributor Loading…
feat: add proof of concept solution for #814 sam sam-tags
#815 opened Feb 17, 2025 by yfarjoun Contributor • Draft
feat: add tags related to optical duplicates. sam sam-tags
#813 opened Feb 16, 2025 by yfarjoun Contributor Loading…
7
Add encryptionScheme parameter to htsget htsget
#808 opened Feb 3, 2025 by brainstorm Contributor Loading…
14
Add SAM recommendation of MAPQ=0 for unmapped reads sam
#753 opened Jan 29, 2024 by jkbonfield Contributor Loading…
1
@jmarshall
6
Remove "top strand" phrase from MM tag description. sam sam-tags
#668 opened Aug 31, 2022 by jkbonfield Contributor Loading…
1
@jmarshall
1
Define optional HTTP 426 response for requests for index files htsget
#665 opened Aug 3, 2022 by jmarshall Member Loading…
Cramv4 cram
#502 opened May 28, 2020 by jkbonfield Contributor Loading…
2
Add splitting BAM index to spec sam
#321 opened Jun 5, 2018 by tomwhite Loading…
44
Clarify Number=G tags in INFO as discussed in #272 vcf
#309 opened May 4, 2018 by pd3 Member Loading…
1
SAM/VCF Strict draft sam vcf
#283 opened Feb 5, 2018 by d-cameron Contributor Loading…
72
htsget: maximum block sizes for efficient buffering htsget
#271 opened Dec 14, 2017 by jeromekelleher Member Loading…
8
SV Improvements - Stage 1 vcf
#266 opened Dec 6, 2017 by thefferon Loading… VCF v4.4
28
Yf file extensions
#243 opened Sep 26, 2017 by yfarjoun Contributor Loading…
9
htsget referenceMD5 query parameter htsget
#210 opened May 18, 2017 by mlin Member Loading…
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