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1. Cecret Cecret Public

   Forked from UPHL-BioNGS/Cecret

   Nextflow workflow for our analysis of SARS-COV-2

   Nextflow

2. mycosnp-nf mycosnp-nf Public

   Forked from CDCgov/mycosnp-nf

   nf-core/mycosnp

   Nextflow

3. StaPH-B/docker-builds StaPH-B/docker-builds Public

   📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics

   Dockerfile 222 137

4. UPHL-BioNGS/walkercreek UPHL-BioNGS/walkercreek Public

   A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.

   Nextflow 10 3