cell-free ChIP-seq pipeline
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
A mini nextflow pipeline to perform a multi-step peak annotation for ChIP seq or DamID seq peaks obtained from Drosophila melanogaster. The peaks are first annotated to known CRMs, then peaks falling in 1st introns of genes, then using homer to do close to TSS annotation. This can be adapted to other organisms.
Genomic regions (e.g ChIPseq peaks) annotation with TxDB object
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