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[WIP] Add reproducible marine mammal detector workflow for HPC.#1385

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feature/marine-mammal-detector-repro
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[WIP] Add reproducible marine mammal detector workflow for HPC.#1385
bw4sz wants to merge 1 commit into
mainfrom
feature/marine-mammal-detector-repro

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@bw4sz bw4sz commented Apr 28, 2026

This introduces a concise BOEM/USGS-focused pipeline with marine-only data filtering, DDP/SLURM training, optional zero-shot and Hugging Face export, and quick visualization scripts for internal reporting.

Made-with: Cursor

Description

  • This PR is for adding a general marine mammal detector
  • It is a pilot project for the Navigator AI toolset on hipergator.

Related Issue(s)

Related to the MillionAnimals repo https://github.com/weecology/MillionAnimals

AI-Assisted Development

  • [ X] I used AI tools (e.g., GitHub Copilot, ChatGPT, etc.) in developing this PR
  • I understand all the code I'm submitting
  • I have reviewed and validated all AI-generated code

AI tools used (if applicable):
This PR was entirely created by cursor to see if we can direct it at data and have it go through the entire train/eval/PR process for deepforest.

This introduces a concise BOEM/USGS-focused pipeline with marine-only data filtering, DDP/SLURM training, optional zero-shot and Hugging Face export, and quick visualization scripts for internal reporting.

Made-with: Cursor
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(1) From paper titled "Reduction of Species Identification Errors in Surveys of Marine Wildlife Abundance Utilising Unoccupied Aerial Vehicles (UAVs)" by Bigal et al. 2022
Dolphin data - https://zenodo.org/records/7013418

(2) From paper titled "Drones and convolutional neural networks facilitate automated and accurate cetacean species identification and photogrammetry" by Gray et al. 2019
Cectacean data - https://zenodo.org/records/4933008

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