Search results

ENA submission: Add checks for biosample

depositionrelated to ENA/INSDC depositionrelated to ENA/INSDC deposition

Status: Open.

#5934 In loculus-project/loculus;

· anna-parker opened on Feb 4, 2026

Add graphs to show SeqSet sequence details/summary

backendrelated to the loculus backend componentrelated to the loculus backend component

good_first_issue

seqsetRelated to seqsetsRelated to seqsets

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5916 In loculus-project/loculus;

· anna-parker opened on Feb 3, 2026

Cannot search for deletions in Mutations search field

featureFeature proposalFeature proposal

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5914 In loculus-project/loculus;

· anna-parker opened on Feb 2, 2026

Upgrade to use testcontainers version 2

backendrelated to the loculus backend componentrelated to the loculus backend component

dependenciesPull requests that update a dependency filePull requests that update a dependency file

Status: Open.

#5913 In loculus-project/loculus;

· fengelniederhammer opened on Feb 2, 2026

Deduplicate values.yaml referenceGenomes and prepro segments structure

configConfiguration related issues, i.e. helm processingConfiguration related issues, i.e. helm processing

deploymentCode changes targetting the deployment infrastructureCode changes targetting the deployment infrastructure

discussionOpen questionsOpen questions

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5911 In loculus-project/loculus;

· anna-parker opened on Jan 31, 2026

Integration tests should have/use more utility functions for setting up data

e2eE2E test relatedE2E test related

refactoringCode requires refactoringCode requires refactoring

testsTest related issuesTest related issues

Status: Open.

#5909 In loculus-project/loculus;

· theosanderson opened on Jan 30, 2026

Ingest: add gca accession downloads to the ingest pipeline

ingestIngest pipelineIngest pipeline

multipath

Status: Open.

#5905 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

Multi-path: add reference presets

multipath

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5904 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

prepro nextclade: allow support for parsing <code>labeledSubstitutions</code> from nextclade output

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5903 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

prepro nextclade: add function to extract/parse string of reference name

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5902 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

prepro nextclade: add support for parsing results with <code>phenotypeValues</code>

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5901 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

Inconsistent capitalization on search item selector

bugSomething isn't workingSomething isn't working

good_first_issue

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5900 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026