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chore(modules): migrate adapterremoval & adapterremovalfixprefix to new version output format#10266

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maxcumminsandfred-lab wants to merge 8 commits intonf-core:masterfrom
maxcumminsandfred-lab:migrate-versions-adapterremoval
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chore(modules): migrate adapterremoval & adapterremovalfixprefix to new version output format#10266
maxcumminsandfred-lab wants to merge 8 commits intonf-core:masterfrom
maxcumminsandfred-lab:migrate-versions-adapterremoval

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@maxcumminsandfred-lab maxcumminsandfred-lab commented Feb 25, 2026

Migrated module to use topic channels for version outputs.

Generated by nfcore-migrate-versions skill (ClawHub pending).

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

maxcumminsandfred and others added 4 commits February 25, 2026 21:22
Migrated module to use topic channels for version outputs.

Files changed:
- modules/nf-core/adapterremoval/main.nf
- modules/nf-core/adapterremoval/meta.yml
- modules/nf-core/adapterremoval/tests/main.nf.test
- modules/nf-core/adapterremoval/tests/main.nf.test.snap

Generated by nfcore-migrate-versions skill (ClawHub pending).
@maxcumminsandfred-lab maxcumminsandfred-lab changed the title Migrate versions adapterremoval chore(modules): migrate adapterremoval to new version output format Feb 25, 2026
@maxcumminsandfred-lab maxcumminsandfred-lab changed the title chore(modules): migrate adapterremoval to new version output format chore(modules): migrate adapterremoval & adapterremovalfixprefix to new version output format Feb 26, 2026
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