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Pull requests: nf-core/modules

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Pull requests list

chore(modules): migrate adapterremoval to new version output format
#10266 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
3 of 17 tasks
chore(modules): migrate abricate/summary to new version output format
#10265 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
2 of 17 tasks
chore(modules): migrate abricate/run to new version output format
#10264 opened Feb 25, 2026 by maxcumminsandfred-lab Loading…
3 of 17 tasks
module update: subread/featurecounts - Bump container versions #10249
#10250 opened Feb 25, 2026 by PeterKneale Loading…
5 tasks done
1
4
Add nextflow-lint pre-commit hook
#10241 opened Feb 24, 2026 by mashehu Loading…
12
Add MMseqs makepaddedseqdb new module Adding a new module
#10239 opened Feb 24, 2026 by nbtm-sh Loading…
17 tasks done
24
Update multivcfanalyzer module
#10137 opened Feb 23, 2026 by TCLamnidis Loading…
2 of 17 tasks
1
Rmats work in progress PR
#10128 opened Feb 23, 2026 by akaviaLab • Draft
1 of 17 tasks
2
qcatch: Add doublet detection test
#10126 opened Feb 22, 2026 by an-altosian Loading…
2 tasks done
5
Remove imNotification from utils_nfcore_pipeline
#10119 opened Feb 20, 2026 by FriederikeHanssen Loading…
2 tasks
Integrate multiqcsav into bcl_demultiplex subworkflow
#10117 opened Feb 19, 2026 by delfiterradas • Draft
17 tasks
1
@delfiterradas
1
Paraphase update
#10099 opened Feb 18, 2026 by bagnacan Loading…
3 tasks done
4
Add MacSyFinder modules for model management and protein system detection size/xl
#10074 opened Feb 17, 2026 by Copilot AI • Draft
1
@brovolia
15
new module: gatk4/analyzecovariates new module Adding a new module
#10063 opened Feb 16, 2026 by thomasisensee Loading…
14 tasks done
1
1
Migrate hmtnote to topic versions
#10062 opened Feb 16, 2026 by emmadizdarevic • Draft
17 tasks
Fix labeler workflow for fork PRs using workflow_run pattern
#10045 opened Feb 16, 2026 by Copilot AI • Draft
@ewels
7
Deacon index set operations
#10027 opened Feb 13, 2026 by pmoris Loading…
17 tasks
2
DO NOT MERGE: clean repo, and more strict syntax fixes
#10016 opened Feb 13, 2026 by maxulysse • Draft
17 tasks
1
New module: lsa/cosine (calculate cosine similarity)
#10002 opened Feb 12, 2026 by miguelrosell Loading…
12 tasks done
26
give bwamem2/index a makeover
#9997 opened Feb 12, 2026 by maxulysse Loading…
17 tasks
5
Avoid redundant index steps for shared refs
#9983 opened Feb 12, 2026 by pmoris Loading…
1 of 17 tasks
9
Module to build local snpEff database
#9967 opened Feb 11, 2026 by pmoris Loading…
6 of 17 tasks
FASTQC: multiqc_files topic
#9964 opened Feb 10, 2026 by maxulysse Loading…
17 tasks
27
Telescope
#9948 opened Feb 9, 2026 by hanalysis Loading…
9 tasks done
1
7
Change output directory and file names for bwa index
#9947 opened Feb 9, 2026 by pmoris Loading…
12 of 17 tasks
5
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