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@mmYeung mmYeung commented Dec 12, 2025

PR checklist

updating input suffix check for reference file input, including nf-tests

Closes #5021

  • [ x ] This comment contains a description of changes (with reason).
  • [ x ] If you've fixed a bug or added code that should be tested, add tests!
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • [ x ] nf-core modules test <MODULE> --profile singularity

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Verifybamid2 does not allow for reference files ending with '.fa'

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